Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0169
         (722 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82269-8|CAJ76946.1|  185|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z82269-5|CAH60772.1|  618|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z82269-4|CAB70200.2|  633|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AL021487-16|CAJ76947.1|  185|Caenorhabditis elegans Hypothetical...    29   2.5  
AL021487-15|CAH60766.1|  618|Caenorhabditis elegans Hypothetical...    29   2.5  
AL021487-14|CAA16360.3|  633|Caenorhabditis elegans Hypothetical...    29   2.5  
Z74041-6|CAA98517.2|  337|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z49071-8|CAA88878.2|  322|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AF040647-1|AAB94994.1|   45|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z72509-1|CAA96645.1|  339|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z50857-6|CAA90720.1|  283|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z50806-6|CAA90692.1|  283|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U50197-1|AAA91254.1|  329|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z82269-8|CAJ76946.1|  185|Caenorhabditis elegans Hypothetical
           protein Y45F10B.13c protein.
          Length = 185

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = -3

Query: 240 WPVLTRTARCRAGTHFL--WAAKNQQIVRNKSD-LMLYECN*ITERA*NRKQKRGNY*NP 70
           WP  + T+   AG +    W  K+ + V    D L++  C  + E+  +   K  +    
Sbjct: 64  WPPASNTSAAAAGNNGRDEWIGKSMRGVEENDDGLVMTMCRRVVEKKKDENWKWRDESGR 123

Query: 69  LSVQKHNN*W 40
           L  +KHNN W
Sbjct: 124 LLDEKHNNTW 133


>Z82269-5|CAH60772.1|  618|Caenorhabditis elegans Hypothetical
           protein Y45F10B.13b protein.
          Length = 618

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = -3

Query: 240 WPVLTRTARCRAGTHFL--WAAKNQQIVRNKSD-LMLYECN*ITERA*NRKQKRGNY*NP 70
           WP  + T+   AG +    W  K+ + V    D L++  C  + E+  +   K  +    
Sbjct: 497 WPPASNTSAAAAGNNGRDEWIGKSMRGVEENDDGLVMTMCRRVVEKKKDENWKWRDESGR 556

Query: 69  LSVQKHNN*W 40
           L  +KHNN W
Sbjct: 557 LLDEKHNNTW 566


>Z82269-4|CAB70200.2|  633|Caenorhabditis elegans Hypothetical
           protein Y45F10B.13a protein.
          Length = 633

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = -3

Query: 240 WPVLTRTARCRAGTHFL--WAAKNQQIVRNKSD-LMLYECN*ITERA*NRKQKRGNY*NP 70
           WP  + T+   AG +    W  K+ + V    D L++  C  + E+  +   K  +    
Sbjct: 512 WPPASNTSAAAAGNNGRDEWIGKSMRGVEENDDGLVMTMCRRVVEKKKDENWKWRDESGR 571

Query: 69  LSVQKHNN*W 40
           L  +KHNN W
Sbjct: 572 LLDEKHNNTW 581


>AL021487-16|CAJ76947.1|  185|Caenorhabditis elegans Hypothetical
           protein Y45F10B.13c protein.
          Length = 185

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = -3

Query: 240 WPVLTRTARCRAGTHFL--WAAKNQQIVRNKSD-LMLYECN*ITERA*NRKQKRGNY*NP 70
           WP  + T+   AG +    W  K+ + V    D L++  C  + E+  +   K  +    
Sbjct: 64  WPPASNTSAAAAGNNGRDEWIGKSMRGVEENDDGLVMTMCRRVVEKKKDENWKWRDESGR 123

Query: 69  LSVQKHNN*W 40
           L  +KHNN W
Sbjct: 124 LLDEKHNNTW 133


>AL021487-15|CAH60766.1|  618|Caenorhabditis elegans Hypothetical
           protein Y45F10B.13b protein.
          Length = 618

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = -3

Query: 240 WPVLTRTARCRAGTHFL--WAAKNQQIVRNKSD-LMLYECN*ITERA*NRKQKRGNY*NP 70
           WP  + T+   AG +    W  K+ + V    D L++  C  + E+  +   K  +    
Sbjct: 497 WPPASNTSAAAAGNNGRDEWIGKSMRGVEENDDGLVMTMCRRVVEKKKDENWKWRDESGR 556

Query: 69  LSVQKHNN*W 40
           L  +KHNN W
Sbjct: 557 LLDEKHNNTW 566


>AL021487-14|CAA16360.3|  633|Caenorhabditis elegans Hypothetical
           protein Y45F10B.13a protein.
          Length = 633

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = -3

Query: 240 WPVLTRTARCRAGTHFL--WAAKNQQIVRNKSD-LMLYECN*ITERA*NRKQKRGNY*NP 70
           WP  + T+   AG +    W  K+ + V    D L++  C  + E+  +   K  +    
Sbjct: 512 WPPASNTSAAAAGNNGRDEWIGKSMRGVEENDDGLVMTMCRRVVEKKKDENWKWRDESGR 571

Query: 69  LSVQKHNN*W 40
           L  +KHNN W
Sbjct: 572 LLDEKHNNTW 581


>Z74041-6|CAA98517.2|  337|Caenorhabditis elegans Hypothetical
           protein T03F7.3 protein.
          Length = 337

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 18  PNMLIKHPINYYVFAPITGFNSFPFSVFCFMRVPL 122
           P +++  P+NYY F+ IT + +   + FCF+ + L
Sbjct: 257 PFVIMAVPVNYYSFSIITDYYNQSANNFCFLIMSL 291


>Z49071-8|CAA88878.2|  322|Caenorhabditis elegans Hypothetical
           protein T22C8.6 protein.
          Length = 322

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 181 CGPKKMSASSATRCSRQHRPGAQLLE 258
           C PKK SA +A RC+   R  AQ +E
Sbjct: 119 CQPKKTSARNAGRCAAYFRDCAQFIE 144


>AF040647-1|AAB94994.1|   45|Caenorhabditis elegans Hypothetical
           protein F54D12.4 protein.
          Length = 45

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 78  NSFPFSVFCFMRVPLFNCTRKASNRFCYVLFADFLRPKENECQLC 212
           NSF  S F  +  P+F C R  +N  CY+L +D +       QLC
Sbjct: 4   NSFVSSFFIAIPQPVF-CQR--ANFLCYILNSDMMNELFELAQLC 45


>Z72509-1|CAA96645.1|  339|Caenorhabditis elegans Hypothetical
           protein F32G8.1 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = +1

Query: 70  RVLIVSPFLFSVLCAFRYLIALVKHQIAFVTYYLLIFCGPKKMSASSATR 219
           +VL +   L + + AF  ++ +  +Q AF+ ++   FCG KK+S +   R
Sbjct: 282 KVLYMMLSLPTAIDAFIVIVTITPYQKAFIAFFKDTFCG-KKVSPAIVRR 330


>Z50857-6|CAA90720.1|  283|Caenorhabditis elegans Hypothetical
           protein M79.2 protein.
          Length = 283

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
 Frame = +1

Query: 49  IMFLHR*RV-LIVSPFLFSVLC----AFRYLIALVKHQIAFVTYYLLIFCGPKKMSASSA 213
           I FL   RV L+++ F+F  L     AFR L    K  +A V  Y  +FCG   + A+  
Sbjct: 168 IFFLMPVRVCLLLTSFVFVALAGLQTAFRTLSDREKTWVAIV--YCRLFCGSMGLVANYR 225

Query: 214 TRCSRQHRPGAQLLEH 261
               R  +PG  +  H
Sbjct: 226 NPQFRPKKPGVAVSNH 241


>Z50806-6|CAA90692.1|  283|Caenorhabditis elegans Hypothetical
           protein M79.2 protein.
          Length = 283

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
 Frame = +1

Query: 49  IMFLHR*RV-LIVSPFLFSVLC----AFRYLIALVKHQIAFVTYYLLIFCGPKKMSASSA 213
           I FL   RV L+++ F+F  L     AFR L    K  +A V  Y  +FCG   + A+  
Sbjct: 168 IFFLMPVRVCLLLTSFVFVALAGLQTAFRTLSDREKTWVAIV--YCRLFCGSMGLVANYR 225

Query: 214 TRCSRQHRPGAQLLEH 261
               R  +PG  +  H
Sbjct: 226 NPQFRPKKPGVAVSNH 241


>U50197-1|AAA91254.1|  329|Caenorhabditis elegans Hypothetical
           protein F25E2.1 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 70  RVLIVSPFLFSVLCAFRYLIALVKHQIAFVTYYLLIF 180
           R LI   FL  +     YLI +V+H +A V +Y+  F
Sbjct: 152 RSLIFCIFLDFLPVCILYLICVVEHDVAKVLFYIFAF 188


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,413,679
Number of Sequences: 27780
Number of extensions: 296876
Number of successful extensions: 615
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)