Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0165
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ...    27   1.8  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.1  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    27   3.1  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    27   3.1  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    26   4.1  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    26   5.5  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    26   5.5  
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    26   5.5  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    26   5.5  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    26   5.5  
SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy...    25   7.2  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    25   7.2  
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    25   7.2  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    25   7.2  
SPAC1B3.07c |vps28||ESCRT I complex subunit Vps28|Schizosaccharo...    25   9.5  
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      25   9.5  

>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 492 NTHHYSSPHNNYTKMALDI*MFNFVSTNRMH*F 590
           NTH Y  PH N T +A ++ +FN  S+N +  F
Sbjct: 146 NTHEYFVPHWNGTYLASNVQIFN--SSNELEQF 176


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 24/100 (24%), Positives = 41/100 (41%)
 Frame = +3

Query: 51  SVLNNSSEFLQNGTSIGTGLSRASHYAVHPQPQLRRGLDPVSERPSRKQARTEPRTVTNY 230
           S+L++SS    + +S  + LS +S  +      +   +   S++ S   A     +    
Sbjct: 47  SMLSSSSATAISSSSSSSPLSSSSFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATL 106

Query: 231 ISPRDAMPSVVYSRESLHPNSSSPVRSKRSDANLMCEISH 350
            S   A P+   S  +L  +SSS V S  S       +SH
Sbjct: 107 TSSSSASPTSSSSSHALSSSSSSLVASSSSSGMSSSSLSH 146


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +3

Query: 60  NNSSEFLQNGTSIGTGLSRASHYAV-HPQP--QLRRGLDPVSERPSRKQARTEP 212
           NNS +  Q   S  +  S ++ +A  +P    +  + L PV+  PS + ++TEP
Sbjct: 35  NNSYQLPQLSRSATSNFSTSARFAARYPTTAGESFQNLTPVNSNPSNQNSKTEP 88


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -2

Query: 612 NKYKVHFKINAFDWLIQN*T-FKYLTPSLYNYYAETNND 499
           N YK+HF+ N    L  N T       ++YN YA+ + D
Sbjct: 746 NVYKIHFQYNNISGLADNYTLLSKHDRAMYNNYADYSPD 784


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 492 NTHHYSSPHNNYTKMALDI*MFNFVSTNRMH*F 590
           NTH Y  PH N T +A ++ ++N  S+N +  F
Sbjct: 146 NTHEYFVPHWNGTYLASNVQIYN--SSNELEQF 176


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 15  LIWEEAWKSVPLSVLNNSSE 74
           ++W + WK+ P SVL   SE
Sbjct: 226 IVWNQRWKNSPESVLKARSE 245


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 201 RTEPRTVTNYISPRDAMPSVVYSRESL 281
           + + + ++NY+ P  + P + YSR SL
Sbjct: 24  KQDDQVISNYLKPVRSYPYIKYSRSSL 50


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
 Frame = +3

Query: 51  SVLNNSSEFLQNGTSIGTGLSRASHYAVHPQPQLRRGLDPVS-ERPSRKQARTEPRTVTN 227
           SV + SS  + N TS    +S  +  A            P +   PS +Q   +   ++ 
Sbjct: 163 SVKSTSSATVTNVTSKKEAISATTSLAQSSPNLASLSKQPSTVHAPSTRQRDLKSSILSL 222

Query: 228 YISPRDAMPSVVYSRESLHPNSSSPVRSKRSDA 326
           Y SPR  + S   +  + + N  SPV +  + +
Sbjct: 223 YASPRPQVSSSSITTNATYQNLPSPVSTSTTSS 255


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
 Frame = +3

Query: 261 VYSRESLHPNSSSPVRSKRS------DANLMCEISHPRWDLGPRSDRSPYPHS 401
           +Y+ E +  N    V+S R+      DA  M  ++H RW+    + +  Y H+
Sbjct: 204 IYNTEKIRSNICDAVQSSRNGICRHVDARAMVNLNHSRWERRYYARQVTYLHN 256


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1315

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 531  LYNYYAETNNDVCYNEICIDSFQCMEH 451
            L+N YA+    + Y EIC+  FQC ++
Sbjct: 1107 LFNNYADP---LGYGEICLSIFQCADY 1130


>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 261 VYSRESLHPNSSSPVRSKRSDANLMCEIS 347
           +Y  +  HPNS   +R    D+N +C +S
Sbjct: 168 LYKVKQHHPNSRLLLRISTDDSNSLCRLS 196


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 477 YIFRYNTHHYSSPHNNY 527
           YIF + +HH +SP N Y
Sbjct: 73  YIFAHISHHKASPENYY 89


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = -2

Query: 441 SRNGRAMGQQRTEPNADKDYDLNADRGPNGD--EKFH 337
           ++NGR    +R + N    YDL+   G   D  E FH
Sbjct: 119 TKNGRIRSSRREDDNRIPFYDLDVAEGAEDDLQEDFH 155


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 180 RPSRKQARTEPRTVTNYISPRDAMPSVVYSRESLHPNSSSPV 305
           +P     +T P  + N  S R A  S   S +S H  SS P+
Sbjct: 232 KPKNSFVKTSPSPLANGPSFRSANASPFDSCDSFHSGSSIPI 273


>SPAC1B3.07c |vps28||ESCRT I complex subunit
           Vps28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = +3

Query: 66  SSEFLQNGTSIGTGLSRASHYAVHPQPQLRRGLDPVS--ERPSRKQARTEPRTVTNYISP 239
           S E  Q+ ++    +S  +  ++       + ++P      PS   A++    V N+I+ 
Sbjct: 108 SDERSQSNSTFSNAISTTAEPSIAMNDTTPQTVNPTKAPSNPSASIAKSIAGLVQNFITT 167

Query: 240 RDAMPSVVYSRESLHP 287
            DA+     +++ LHP
Sbjct: 168 LDAIRLNFIAKDQLHP 183


>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 288 NSSSPVRSKRSDANLMCEISHPRWDLGP 371
           NS + +R   SD  ++ E+S P+  +GP
Sbjct: 277 NSPTNIRQVSSDGRVVVEVSIPKLCIGP 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,674,906
Number of Sequences: 5004
Number of extensions: 56471
Number of successful extensions: 194
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)