Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0165
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0236 + 16717320-16717496,16718082-16718240,16719410-167194... 31 1.1
01_01_1169 + 9313135-9313332,9313496-9314229,9314933-9317036 30 1.9
04_04_0318 + 24347364-24348826,24348920-24349048,24349158-243492... 29 2.4
09_04_0536 + 18402259-18402300,18402441-18402573,18403173-18403792 29 3.2
06_03_0475 - 21217253-21217639,21217717-21218757 29 3.2
06_01_0720 + 5248714-5248967,5250600-5251086 29 3.2
04_04_0835 + 28538032-28539006,28539113-28539203,28539291-285394... 29 4.3
02_01_0150 + 1063732-1064214,1064290-1064355,1064721-1064803,106... 29 4.3
10_08_0936 - 21679002-21679800,21679893-21680116,21681174-216813... 28 5.6
09_04_0506 - 18188785-18190599 28 5.6
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 28 5.6
06_01_1186 - 10195175-10195621,10195882-10195930,10196019-101961... 28 7.5
03_04_0243 + 19298293-19299117 27 9.9
02_01_0500 - 3623837-3624019,3624591-3624778,3625209-3626147,362... 27 9.9
01_01_0275 - 2265650-2265904,2266044-2266204,2266381-2266588,226... 27 9.9
>02_03_0236 +
16717320-16717496,16718082-16718240,16719410-16719472,
16720041-16720205,16721140-16721217,16721318-16721428,
16721516-16721632,16721713-16721808,16722592-16722662,
16722780-16723011
Length = 422
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Frame = +3
Query: 108 LSRASHYAVHPQPQLRRGLDPVSERPSRK--QARTEPRTVT--NYISPRDAMPSVVYSRE 275
+++ HY+ HPQ Q+ G D E +K + ++P +T + + Y R
Sbjct: 40 MNQIIHYSFHPQDQMNAGTDASEEEEMQKISEGVSDPNVITPGTEFMEKISQALTYYIRA 99
Query: 276 SLHPNSSSPVRSKRSDANLM 335
L NSS P DA+L+
Sbjct: 100 RL--NSSDPGWKHIMDADLI 117
>01_01_1169 + 9313135-9313332,9313496-9314229,9314933-9317036
Length = 1011
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -2
Query: 477 IDSFQCMEHNHTSRNGRAMGQQRTEPNADKDYDLNADRGPN 355
++S Q + H + + +G AMG+ P+ K +N ++GPN
Sbjct: 762 MESLQTIAHANVTSSGIAMGELGDLPSLTKLCVMNCEKGPN 802
>04_04_0318 +
24347364-24348826,24348920-24349048,24349158-24349293,
24349447-24349535,24349631-24349742,24349836-24349942,
24350033-24350129
Length = 710
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +3
Query: 234 SPRDAMPSVVY-SRESLHPNSSSPVRSKRSDANLMCEISHPRWDLGPRSDRSPYPHSARF 410
SP D P+V S E L ++ S V + + + M IS RW + PH +
Sbjct: 193 SPMDVEPAVASESPEQLQEHAESRVMEEEEEYSTMRNISTSRWAGANDDEEEGAPHRKKK 252
Query: 411 AVGPS 425
+ P+
Sbjct: 253 SASPA 257
>09_04_0536 + 18402259-18402300,18402441-18402573,18403173-18403792
Length = 264
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 104 RAVACVALRSSPAAAATS-WAGSRERAPVPQASTHRTAHRY 223
R + A R+SPAAAA + W + AP+P A H +
Sbjct: 20 RQMTAFAARTSPAAAAEAFWRAAMPGAPMPDAIVELLHHEH 60
>06_03_0475 - 21217253-21217639,21217717-21218757
Length = 475
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -2
Query: 195 ACGTGARSRDPAHD---VAAAAGELRNATHATA 106
A G GA P H AAAAGELR A H+ A
Sbjct: 227 AAGAGAALFHPTHGDDAAAAAAGELRQAYHSRA 259
>06_01_0720 + 5248714-5248967,5250600-5251086
Length = 246
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +3
Query: 138 PQPQLRRGLDPVSERPSRKQARTEPRTVTNYISPRDAMPSVVYSRESLHPN--SSSPVRS 311
P P+ R+GL P S ++ Q++ SP ++ S R++L+P SSP ++
Sbjct: 117 PSPKKRKGLLPSSVDKNKSQSKELSPVDDATSSPTNSTSSPTNCRKALYPAVVDSSPGKN 176
Query: 312 KRSDANLMCE 341
+ D C+
Sbjct: 177 RGYDERECCK 186
>04_04_0835 +
28538032-28539006,28539113-28539203,28539291-28539448,
28539543-28539594,28539707-28539786,28539890-28539983,
28540078-28540633,28541160-28541259,28541576-28541617,
28542445-28542588
Length = 763
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 128 RSSPAAAATSWAGSRERAPVPQAS 199
RS+ AA A W G++ R+PVP +S
Sbjct: 538 RSNNAAIAIPWNGTKPRSPVPLSS 561
>02_01_0150 +
1063732-1064214,1064290-1064355,1064721-1064803,
1065100-1065155,1065247-1066061
Length = 500
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2
Query: 116 CVALRSSPAAAATSWAGSRERAPVPQASTHRTAHRYQLYI 235
C+ R + AAAA AGS E+ P AS+ R R+ +Y+
Sbjct: 313 CLGKREAAAAAA---AGSPEQEHNPAASSARRHRRFMIYV 349
>10_08_0936 -
21679002-21679800,21679893-21680116,21681174-21681361,
21681505-21682597
Length = 767
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 460 YGTQSHKPKRQSDGPTANRAECG*GLRSERG 368
Y + + R +G NR+ECG RSE G
Sbjct: 247 YASTTTSETRSEEGEMGNRSECGFAARSEYG 277
>09_04_0506 - 18188785-18190599
Length = 604
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +3
Query: 78 LQNGTSIGTGLSRASHYAVHPQP--QLRRGLDPVSERPSRKQARTEPRTVTNYISPRDAM 251
L N ++G G ++SH P P Q ++ P+S++P QA P A
Sbjct: 34 LYNDVNVGDGFLQSSHPPPQPPPPPQQQQQPPPISQQPPPLQAPPPPPQQQQQQQQLQAP 93
Query: 252 PSV 260
PS+
Sbjct: 94 PSL 96
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +3
Query: 120 SHYAVHPQPQLRR-GLDPVSERPSRKQARTEP 212
+H+ H + +L++ GLDPV+ RP A+ +P
Sbjct: 1793 NHWNTHIKKKLKKMGLDPVTHRPVMSLAQPDP 1824
>06_01_1186 -
10195175-10195621,10195882-10195930,10196019-10196168,
10196513-10196658,10196877-10196914,10197000-10197216,
10197393-10197611,10197753-10197879,10198631-10198812,
10198928-10199131,10199773-10199782,10200789-10200815,
10201072-10201132,10201731-10201851
Length = 665
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 549 KYLTPSLYNYYAETNNDVCYNEICIDSFQC 460
K LT SL TNN + ++E+ D +QC
Sbjct: 271 KILTSSLDGDGTSTNNSIDHHEVIFDLYQC 300
>03_04_0243 + 19298293-19299117
Length = 274
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 246 AMPSVVYSRESLHPNSSSPVRSKRSDANLMC 338
AM +SR S P SSSP +R+ ++L C
Sbjct: 188 AMAPTSWSRTSAPPASSSPTSPRRARSSLTC 218
>02_01_0500 -
3623837-3624019,3624591-3624778,3625209-3626147,
3626311-3626479,3626701-3626871,3626948-3627016,
3627094-3627201,3627844-3627997,3628659-3628738,
3628822-3628914,3628951-3629073,3629165-3629915,
3630123-3630163,3630338-3630385
Length = 1038
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +3
Query: 264 YSRESLHPNSSSPVRSKRSDANLMCEISHPRWDLGPRSDRSPYPHSAR 407
YS +S + S +R D +CE H R L DRSPY +R
Sbjct: 181 YSYDSDYEKSRRDGSWRRRD---LCESEHERRGLSHERDRSPYMQHSR 225
>01_01_0275 -
2265650-2265904,2266044-2266204,2266381-2266588,
2266959-2267112,2267557-2267650,2267814-2267919,
2268001-2268075,2268336-2268443,2268672-2268725,
2268818-2268910,2269111-2269206,2269682-2269723
Length = 481
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 354 RWDLGPRSDRSPYPHSARFAVGPSLCRFGLCDCVPY 461
R + P S+ P + ++G ++ FGL C+PY
Sbjct: 432 RGPISPLSEEITEPENNYISIGVAILLFGLLVCLPY 467
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,783,074
Number of Sequences: 37544
Number of extensions: 401849
Number of successful extensions: 1425
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1422
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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