Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0165
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L25599-9|AAN63393.1|  683|Caenorhabditis elegans Aconitase prote...    29   2.9  
L25599-8|AAL65788.1|  665|Caenorhabditis elegans Aconitase prote...    29   2.9  
L25599-7|AAA28050.2|  777|Caenorhabditis elegans Aconitase prote...    29   2.9  
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z50857-5|CAJ43436.1|  719|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z50857-4|CAC42283.1|  694|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z50857-3|CAC42284.1|  753|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AF136239-1|AAD34463.1|  694|Caenorhabditis elegans DAF-12 A2 pro...    28   6.7  
AF136238-1|AAD34462.1|  753|Caenorhabditis elegans DAF-12 A1 pro...    28   6.7  
Z68750-4|CAA92968.3|  256|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical p...    27   8.8  
Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical p...    27   8.8  
U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta p...    27   8.8  
AF040647-7|AAB94996.2|  506|Caenorhabditis elegans Amino acid tr...    27   8.8  

>L25599-9|AAN63393.1|  683|Caenorhabditis elegans Aconitase protein
           2, isoform c protein.
          Length = 683

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
 Frame = -2

Query: 426 AMGQQRTEPNADKDYDL-NADRGPNGDE----KFHTLN*HLNACYEPDYSSWDAKTHENR 262
           A G++     A K  DL  AD G N D+       TL  H+N  + PD +S   K  EN 
Sbjct: 212 ATGRKEIAEEARKYKDLLTADDGANYDQIIEINLDTLTPHVNGPFTPDLASSIDKLGENA 271

Query: 261 LLKAW 247
               W
Sbjct: 272 KKNGW 276


>L25599-8|AAL65788.1|  665|Caenorhabditis elegans Aconitase protein
           2, isoform b protein.
          Length = 665

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
 Frame = -2

Query: 426 AMGQQRTEPNADKDYDL-NADRGPNGDE----KFHTLN*HLNACYEPDYSSWDAKTHENR 262
           A G++     A K  DL  AD G N D+       TL  H+N  + PD +S   K  EN 
Sbjct: 194 ATGRKEIAEEARKYKDLLTADDGANYDQIIEINLDTLTPHVNGPFTPDLASSIDKLGENA 253

Query: 261 LLKAW 247
               W
Sbjct: 254 KKNGW 258


>L25599-7|AAA28050.2|  777|Caenorhabditis elegans Aconitase protein
           2, isoform a protein.
          Length = 777

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
 Frame = -2

Query: 426 AMGQQRTEPNADKDYDL-NADRGPNGDE----KFHTLN*HLNACYEPDYSSWDAKTHENR 262
           A G++     A K  DL  AD G N D+       TL  H+N  + PD +S   K  EN 
Sbjct: 306 ATGRKEIAEEARKYKDLLTADDGANYDQIIEINLDTLTPHVNGPFTPDLASSIDKLGENA 365

Query: 261 LLKAW 247
               W
Sbjct: 366 KKNGW 370


>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical
           protein F40E10.4 protein.
          Length = 1410

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -2

Query: 540 TPSLYNYYAETNNDVCYNEICIDSFQC 460
           TP  Y  + E   D CY   C+++  C
Sbjct: 897 TPGFYGVHCENQIDACYGSPCLNNATC 923


>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
           protein F40E10.4 protein.
          Length = 1410

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -2

Query: 540 TPSLYNYYAETNNDVCYNEICIDSFQC 460
           TP  Y  + E   D CY   C+++  C
Sbjct: 897 TPGFYGVHCENQIDACYGSPCLNNATC 923


>Z50857-5|CAJ43436.1|  719|Caenorhabditis elegans Hypothetical
           protein F11A1.3d protein.
          Length = 719

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/58 (27%), Positives = 23/58 (39%)
 Frame = +3

Query: 138 PQPQLRRGLDPVSERPSRKQARTEPRTVTNYISPRDAMPSVVYSRESLHPNSSSPVRS 311
           PQPQ    ++P+  +         P  +   ISP  A P  + S      + S P RS
Sbjct: 207 PQPQRPLTINPMDNQMMHHMQANRPNAMPQLISPPGAQPYPLTSPVGSSASDSPPNRS 264


>Z50857-4|CAC42283.1|  694|Caenorhabditis elegans Hypothetical
           protein F11A1.3b protein.
          Length = 694

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/58 (27%), Positives = 23/58 (39%)
 Frame = +3

Query: 138 PQPQLRRGLDPVSERPSRKQARTEPRTVTNYISPRDAMPSVVYSRESLHPNSSSPVRS 311
           PQPQ    ++P+  +         P  +   ISP  A P  + S      + S P RS
Sbjct: 182 PQPQRPLTINPMDNQMMHHMQANRPNAMPQLISPPGAQPYPLTSPVGSSASDSPPNRS 239


>Z50857-3|CAC42284.1|  753|Caenorhabditis elegans Hypothetical
           protein F11A1.3a protein.
          Length = 753

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/58 (27%), Positives = 23/58 (39%)
 Frame = +3

Query: 138 PQPQLRRGLDPVSERPSRKQARTEPRTVTNYISPRDAMPSVVYSRESLHPNSSSPVRS 311
           PQPQ    ++P+  +         P  +   ISP  A P  + S      + S P RS
Sbjct: 241 PQPQRPLTINPMDNQMMHHMQANRPNAMPQLISPPGAQPYPLTSPVGSSASDSPPNRS 298


>AF136239-1|AAD34463.1|  694|Caenorhabditis elegans DAF-12 A2
           protein.
          Length = 694

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/58 (27%), Positives = 23/58 (39%)
 Frame = +3

Query: 138 PQPQLRRGLDPVSERPSRKQARTEPRTVTNYISPRDAMPSVVYSRESLHPNSSSPVRS 311
           PQPQ    ++P+  +         P  +   ISP  A P  + S      + S P RS
Sbjct: 182 PQPQRPLTINPMDNQMMHHMQANRPNAMPQLISPPGAQPYPLTSPVGSSASDSPPNRS 239


>AF136238-1|AAD34462.1|  753|Caenorhabditis elegans DAF-12 A1
           protein.
          Length = 753

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/58 (27%), Positives = 23/58 (39%)
 Frame = +3

Query: 138 PQPQLRRGLDPVSERPSRKQARTEPRTVTNYISPRDAMPSVVYSRESLHPNSSSPVRS 311
           PQPQ    ++P+  +         P  +   ISP  A P  + S      + S P RS
Sbjct: 241 PQPQRPLTINPMDNQMMHHMQANRPNAMPQLISPPGAQPYPLTSPVGSSASDSPPNRS 298


>Z68750-4|CAA92968.3|  256|Caenorhabditis elegans Hypothetical
           protein K01A6.5 protein.
          Length = 256

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +3

Query: 132 VHPQPQLRRGLDPVSERPSRKQARTEPRTVTNYISPRDAMPSVVYSR 272
           + PQPQ  R       +  RK+  TE   V N I PR+     VY R
Sbjct: 41  ITPQPQCSRQSRMTEVQQKRKEVGTESSPVKNQI-PRECFHIFVYWR 86


>Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical
           protein T07C4.10 protein.
          Length = 1013

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = +3

Query: 210 PRTVTNYISPRDAMPSVVY----SRESLHPNSSSPVRSKRS 320
           P T + Y +PRD +PS       +   L+P +S+P+R  +S
Sbjct: 5   PPTDSGYPTPRDEIPSTSRPNSPNNAQLYPLTSTPIRGNKS 45


>Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical
           protein ZK1058.2 protein.
          Length = 809

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/51 (21%), Positives = 20/51 (39%)
 Frame = +3

Query: 306 RSKRSDANLMCEISHPRWDLGPRSDRSPYPHSARFAVGPSLCRFGLCDCVP 458
           R K  +    CE + P       +++    + +    G  +C  G C+C P
Sbjct: 500 RCKGGNVGKYCECNRPGMSTAALNEKCKRTNESAICEGRGVCNCGRCECNP 550


>Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical
           protein T07C4.10 protein.
          Length = 1013

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = +3

Query: 210 PRTVTNYISPRDAMPSVVY----SRESLHPNSSSPVRSKRS 320
           P T + Y +PRD +PS       +   L+P +S+P+R  +S
Sbjct: 5   PPTDSGYPTPRDEIPSTSRPNSPNNAQLYPLTSTPIRGNKS 45


>U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta
           pat-3 protein.
          Length = 809

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/51 (21%), Positives = 20/51 (39%)
 Frame = +3

Query: 306 RSKRSDANLMCEISHPRWDLGPRSDRSPYPHSARFAVGPSLCRFGLCDCVP 458
           R K  +    CE + P       +++    + +    G  +C  G C+C P
Sbjct: 500 RCKGGNVGKYCECNRPGMSTAALNEKCKRTNESAICEGRGVCNCGRCECNP 550


>AF040647-7|AAB94996.2|  506|Caenorhabditis elegans Amino acid
           transporter protein 7 protein.
          Length = 506

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 411 AVGPSLCRFGLCDCVPYIGTSRYI 482
           +VG SLC + LC C+   G   Y+
Sbjct: 45  SVGLSLCLWALCACISLFGALSYV 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,897,970
Number of Sequences: 27780
Number of extensions: 324505
Number of successful extensions: 992
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)