Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0165
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.6  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   2.6  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   3.4  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   6.0  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   6.0  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    21   7.9  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    21   7.9  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    21   7.9  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    21   7.9  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    21   7.9  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    21   7.9  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    21   7.9  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    21   7.9  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   7.9  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = -2

Query: 324 HLNACYEPDYSSWDAKTHENRL-LKAWHH 241
           H+  C   D+SSW   TH  R+   +W H
Sbjct: 165 HVAKC-ATDFSSWPYDTHRCRINFGSWVH 192


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 483 FRYNTHHYSSPHNNYTK 533
           + YN ++Y   +NNY K
Sbjct: 322 YNYNNNNYKYNYNNYNK 338


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 336 CEISHPRWDLG 368
           C +  PRWDLG
Sbjct: 180 CVVKIPRWDLG 190


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 459 YIGTSRYIFRYNTHHYSSPHNNYTKM 536
           Y   + Y   YN ++ ++ +NNY K+
Sbjct: 91  YSNYNNYNNNYNNNYNNNYNNNYKKL 116


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 459 YIGTSRYIFRYNTHHYSSPHNNYTKM 536
           Y   + Y   YN ++ ++ +NNY K+
Sbjct: 91  YSNYNNYNNNYNNNYNNNYNNNYKKL 116


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 489 YNTHHYSSPHNNYTKMALDI 548
           YN ++ ++ +NNY K+  +I
Sbjct: 94  YNNYNNNNNYNNYKKLYYNI 113


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 489 YNTHHYSSPHNNYTKMALDI 548
           YN ++ ++ +NNY K+  +I
Sbjct: 94  YNNYNNNNNYNNYKKLYYNI 113


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 489 YNTHHYSSPHNNYTKMALDI 548
           YN ++ ++ +NNY K+  +I
Sbjct: 94  YNNYNNNNNYNNYKKLYYNI 113


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 489 YNTHHYSSPHNNYTKMALDI 548
           YN ++ ++ +NNY K+  +I
Sbjct: 94  YNNYNNNNNYNNYKKLYYNI 113


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 489 YNTHHYSSPHNNYTKMALDI 548
           YN ++ ++ +NNY K+  +I
Sbjct: 94  YNNYNNNNNYNNYKKLYYNI 113


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 489 YNTHHYSSPHNNYTKMALDI 548
           YN ++ ++ +NNY K+  +I
Sbjct: 94  YNNYNNNNNYNNYKKLYYNI 113


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 489 YNTHHYSSPHNNYTKMALDI 548
           YN ++ ++ +NNY K+  +I
Sbjct: 94  YNNYNNNNNYNNYKKLYYNI 113


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 489 YNTHHYSSPHNNYTKMALDI 548
           YN ++ ++ +NNY K+  +I
Sbjct: 94  YNNYNNNNNYNNYKKLYYNI 113


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +3

Query: 489 YNTHHYSSPHNNY 527
           YN ++Y++ +NNY
Sbjct: 329 YNNNNYNNNYNNY 341


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,158
Number of Sequences: 438
Number of extensions: 4391
Number of successful extensions: 27
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)