Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0165
(655 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g45330.1 68418.m05564 expressed protein ; expression supporte... 31 0.88
At1g80330.1 68414.m09404 gibberellin 3-beta-dioxygenase, putativ... 30 1.5
At4g18760.1 68417.m02772 leucine-rich repeat family protein cont... 29 2.7
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 28 4.7
At5g07690.1 68418.m00882 myb family transcription factor (MYB29)... 27 8.2
At5g04610.1 68418.m00462 spermidine synthase-related / putrescin... 27 8.2
At4g25880.2 68417.m03722 pumilio/Puf RNA-binding domain-containi... 27 8.2
At4g25880.1 68417.m03721 pumilio/Puf RNA-binding domain-containi... 27 8.2
At2g24620.1 68415.m02941 S-locus glycoprotein family protein con... 27 8.2
>At5g45330.1 68418.m05564 expressed protein ; expression supported
by MPSS
Length = 571
Score = 30.7 bits (66), Expect = 0.88
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Frame = +3
Query: 48 LSVLNNSSEFLQNGTSIGTGLSRASHYAVHPQPQLRR--GLDPVSER--PSRKQARTEPR 215
+ ++++SS+ + + + S +S+ + Q QL GL VS P + + P
Sbjct: 251 MGLVDDSSQVVTRSPDVSSNQSYSSNPSPLGQTQLHTPPGLASVSSNLSPPSEAQLSAPN 310
Query: 216 TVTNYISPRDAMPSVVYSRESLHPNSSSP 302
Y S A+ VVY +S HP+ S P
Sbjct: 311 IQKIYPSAPQAIGKVVYDPQSNHPHRSIP 339
>At1g80330.1 68414.m09404 gibberellin 3-beta-dioxygenase, putative /
gibberellin 3 beta-hydroxylase, putative similar to
gibberellin 3 beta-hydroxylase GA4H GB:AAC83647
[Arabidopsis thaliana], GA4 [GI:2160454]
Length = 355
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 81 QNGTSIGTGLSRASHYAVHPQPQLRRGL 164
++G+ +G G R +HY V P+P+ GL
Sbjct: 197 KSGSKVGRGAIRLNHYPVCPEPERAMGL 224
>At4g18760.1 68417.m02772 leucine-rich repeat family protein
contains leucine rich-repeat domains Pfam:PF00560,
INTERPRO:IPR001611
Length = 431
Score = 29.1 bits (62), Expect = 2.7
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 5/104 (4%)
Frame = -2
Query: 624 FFLNNKYKVHFKI--NAFDWLIQ-N*TFKYLTPSLYNYYAETNNDVCYNEICIDSFQCME 454
F KY H + NAF ++ N +F +L + N+D+CYN + S +
Sbjct: 303 FISKMKYLTHLNLANNAFHGVLPFNASF---IKNLEVFKIGGNSDLCYNHSVLSSKMKLG 359
Query: 453 HNHTSRNGRAMG--QQRTEPNADKDYDLNADRGPNGDEKFHTLN 328
++G + Q+ + N+D DY D E+ H N
Sbjct: 360 IAQCDKHGLPLSPPPQKEDSNSDYDYGNEDDTSEKKKEEHHGPN 403
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = +3
Query: 87 GTSIGTGLSRASHYAVHPQPQLRRGLDPVSERPSRKQARTEPRTVTN 227
GT + +R YAV + LDP SE R PRTVTN
Sbjct: 43 GTFSRSSRTRFIPYAVTETEEKPAALDPSSEAARRVYIGNIPRTVTN 89
>At5g07690.1 68418.m00882 myb family transcription factor (MYB29)
similar to myb transcription factor GI:3941436 from
[Arabidopsis thaliana]
Length = 336
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/59 (27%), Positives = 33/59 (55%)
Frame = +3
Query: 156 RGLDPVSERPSRKQARTEPRTVTNYISPRDAMPSVVYSRESLHPNSSSPVRSKRSDANL 332
+G+DPV+ +P + + ++ + ISP+ PS S +++ P +S + + DA+L
Sbjct: 119 KGIDPVTHKPLAYDSNPDEQSQSGSISPKSLPPS---SSKNV-PEITSSDETPKYDASL 173
>At5g04610.1 68418.m00462 spermidine synthase-related / putrescine
aminopropyltransferase-related contains weak similarity
to Spermidine synthase 2 (EC 2.5.1.16) (Putrescine
aminopropyltransferase 2) (SPDSY 2) (Swiss-Prot:O48659)
[Hyoscyamus niger]
Length = 434
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -1
Query: 97 ILVPFWRNSELLFSTESGTL 38
ILVP R S+ +FSTESG L
Sbjct: 53 ILVPKHRESDWIFSTESGQL 72
>At4g25880.2 68417.m03722 pumilio/Puf RNA-binding domain-containing
protein contains Pfam profile:PF00806 Pumilio-family RNA
binding domains
Length = 852
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 178 SARPASKHAPNRAPLPTIYH 237
+ P+SKH+ NR P P IY+
Sbjct: 69 TTHPSSKHSLNRIPSPPIYY 88
>At4g25880.1 68417.m03721 pumilio/Puf RNA-binding domain-containing
protein contains Pfam profile:PF00806 Pumilio-family RNA
binding domains
Length = 861
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 178 SARPASKHAPNRAPLPTIYH 237
+ P+SKH+ NR P P IY+
Sbjct: 69 TTHPSSKHSLNRIPSPPIYY 88
>At2g24620.1 68415.m02941 S-locus glycoprotein family protein
contains Pfam profile: PF00954 S-locus glycoprotein
family
Length = 157
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = -2
Query: 288 WDAKTHENRLLKAW 247
WDAK++ NR+LK+W
Sbjct: 5 WDAKSNINRVLKSW 18
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,919,771
Number of Sequences: 28952
Number of extensions: 296759
Number of successful extensions: 869
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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