Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0164
(641 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 28 1.3
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 28 1.3
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 27 2.3
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb... 27 3.0
SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe... 26 4.0
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 26 5.3
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 25 7.0
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 25 9.3
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 25 9.3
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +3
Query: 537 SLQSLRTAGGHWQCRCQYQDFRCGRGCSRNQLP 635
S S+ T G W C C + +FR C R P
Sbjct: 553 SRPSVTTDQGDWLCECGFTNFRRRSNCLRCNAP 585
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 27.9 bits (59), Expect = 1.3
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Frame = +1
Query: 97 TSNQSCFQNLNII*---NYSRFITILIKMKEDNVDIDTKNVVKNRELLYRMIIS---QLY 258
T+ QSC + II N+S + +K++ D V +N+ EL+Y + S Q+
Sbjct: 1794 TAKQSCTSLVQIIDDLLNFSELKSGKMKLEPDKVFDVEENIADCIELVYPSLSSKPVQIS 1853
Query: 259 YDGYQPIAATLA 294
YD Y + A LA
Sbjct: 1854 YDIYPNVPALLA 1865
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = +1
Query: 478 EPATYETAYVTSHKMSCRAGAFSHCGQLVATGSVDASIKILDVGEDAREISSRG 639
EP V +H+M R AFS T S D S+K+ + E+ G
Sbjct: 151 EPNLNNVKIVQAHEMEVRDVAFSPNDSKFVTASDDGSLKVWNFHMSTEELKLTG 204
>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 476
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 394 AASNAAEHLLGTTGFDLEYEMDASSLA--PEPATYETAYVTSHKMS 525
A++ AA + GF+ ++ SS A P+P T+ T Y ++ MS
Sbjct: 356 ASNTAAFSSISFGGFNSLNQLPTSSSAFTPQPTTFNTGYTSAFGMS 401
>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 182
Score = 26.2 bits (55), Expect = 4.0
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -2
Query: 460 RPFRTPSQNRLCPKDARQHSMQPAYLSCLAH--AVD-PPS 350
RP+ TP R+C +RQ++ S AH A D PPS
Sbjct: 142 RPYITPHVIRICKSVSRQNAAPAPTASSFAHTTATDIPPS 181
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 529 RAGAFSHCGQLVATGSVDASIKILDVGE 612
R+ AFS G+ +ATG D I+I D+ +
Sbjct: 338 RSVAFSPDGKYLATGVEDQQIRIWDIAQ 365
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 25.4 bits (53), Expect = 7.0
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -1
Query: 617 ASSPTSKILILASTLPVATSCPQ*LKAPARQDILCEVT 504
AS PTS ++ ST+P + P P IL T
Sbjct: 101 ASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILSNST 138
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.0 bits (52), Expect = 9.3
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Frame = +1
Query: 322 PPSDRLLNVMMVGLQHEPDRKDRLAASNAAEHLLGTTGFDLEYEM-DASSLAPEPATYET 498
P R+ N+ +V P + SN ++L TG + + D + +E
Sbjct: 296 PACKRVFNINLVHTLEHPSVVCCVKFSNNGKYL--ATGCNQAANVFDVQTGKKLFTLHEE 353
Query: 499 AYVTSHKMSCRAGAFSHCGQLVATGSVDASIKILDV 606
+ S + R AFS G+ + TG+ D IK+ D+
Sbjct: 354 SPDPSRDLYVRTIAFSPDGKYLVTGTEDRQIKLWDL 389
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 505 VTSHKMSCRAGAFSHCGQLVATGSVDASIKI 597
+T HK S A +S G +ATG +D+ +++
Sbjct: 100 LTGHKDSIVAIDWSFDGTYIATGGMDSQVRL 130
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,553,749
Number of Sequences: 5004
Number of extensions: 51827
Number of successful extensions: 152
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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