Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0164
         (641 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13409| Best HMM Match : No HMM Matches (HMM E-Value=.)              70   2e-12
SB_12192| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.34 
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.60 
SB_49615| Best HMM Match : EAL (HMM E-Value=4e-36)                     30   1.8  
SB_56678| Best HMM Match : WD40 (HMM E-Value=6.4e-22)                  29   3.2  
SB_22898| Best HMM Match : WD40 (HMM E-Value=5.9e-26)                  28   5.6  
SB_36977| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_35178| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_29331| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_20681| Best HMM Match : WD40 (HMM E-Value=3.1e-16)                  27   9.8  
SB_20382| Best HMM Match : WD40 (HMM E-Value=1.7e-23)                  27   9.8  
SB_2014| Best HMM Match : MAM (HMM E-Value=0)                          27   9.8  
SB_23694| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_13409| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 37/83 (44%), Positives = 48/83 (57%)
 Frame = +1

Query: 211 VKNRELLYRMIISQLYYDGYQPIAATLAAAVHADPPCPPSDRLLNVMMVGLQHEPDRKDR 390
           +K RE LY++IISQL+YDG + +AA LA   +   PCPP  RLL ++ +GL  E +  D 
Sbjct: 5   IKQRETLYKLIISQLHYDGCEAVAAALAKTTNIISPCPPCARLLEIVNLGLAAEAEAND- 63

Query: 391 LAASNAAEHLLGTTGFDLEYEMD 459
                     L T G DLEYE D
Sbjct: 64  ----------LATKGIDLEYESD 76


>SB_12192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1339

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -2

Query: 535 QPGRTSCAKSRMPSHTWPAQGPGRKRPFRTPSQ 437
           QP +TS   SR  S T PA+    ++  RTPSQ
Sbjct: 240 QPSKTSSKSSRTSSRTTPARATPSRKSSRTPSQ 272


>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +1

Query: 514  HKMSCRAGAFSHCGQLVATGSVDASIKILDVGED 615
            H+ S    A+S  G L+ATGS D SIK+L    D
Sbjct: 1053 HRGSIYCMAWSSTGDLIATGSNDKSIKVLHFDAD 1086


>SB_49615| Best HMM Match : EAL (HMM E-Value=4e-36)
          Length = 242

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 26/86 (30%), Positives = 38/86 (44%)
 Frame = -2

Query: 613 PLPHLKS*YWHRHCQWPPAVRSD*RLQPGRTSCAKSRMPSHTWPAQGPGRKRPFRTPSQN 434
           PLP      W  +CQW    R++    P   SCA +   +   P +  G  R   TPS+ 
Sbjct: 155 PLPPAAFASWLENCQWQLPRRNETLSSP--CSCACNTASAEHMPQRAVG--RVLVTPSER 210

Query: 433 RLCPKDARQHSMQPAYLSCLAHAVDP 356
           +   +D R+H    A L+ +   VDP
Sbjct: 211 K---RDRREH----AGLAVIHELVDP 229


>SB_56678| Best HMM Match : WD40 (HMM E-Value=6.4e-22)
          Length = 834

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 514 HKMSCRAGAFSHCGQLVATGSVDASIKILDV 606
           HK  CRA AFS  G  + T S D S++ +D+
Sbjct: 89  HKKPCRALAFSKDGLHLFTASKDKSLQAIDM 119


>SB_22898| Best HMM Match : WD40 (HMM E-Value=5.9e-26)
          Length = 490

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 508 TSHKMSCRAGAFSHCGQLVATGSVDASIKI 597
           T HK S     FSH  +LVA+G +   IK+
Sbjct: 119 TGHKDSVTHTGFSHDSKLVASGDMSGMIKV 148


>SB_36977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
 Frame = +1

Query: 241 IISQLYYDGYQPIAATLAAA-VHADPPC--PPSDRLLNVMMVGLQHEPDRKDRLAASNAA 411
           ++  L   GY  +   ++A     D PC  P  DR+       +QHE    D +AA  A 
Sbjct: 157 MLELLVMPGYSRLPGIISAYHPRPDLPCRGPNCDRIFKYSKCRIQHEEREHDLVAADEAI 216

Query: 412 EHLLGTTGFDLE 447
                T+ ++ E
Sbjct: 217 TESESTSNYNEE 228


>SB_35178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 372

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +1

Query: 241 IISQLYYDGYQPIAATLA--AAVHADPPCPPSDRLLNVMMVGLQHEPDRKDRLAASNAAE 414
           ++S   Y G +PIA  L   A +     C  S   L  +M     +P+  D LAA + A 
Sbjct: 196 VVSMNAYLGAEPIAKALGYGADIVITGRCVDSALALGPLMHEFGWKPNEYDLLAAGSLAG 255

Query: 415 HLL 423
           HL+
Sbjct: 256 HLI 258


>SB_29331| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 47

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/31 (29%), Positives = 23/31 (74%)
 Frame = +1

Query: 169 KMKEDNVDIDTKNVVKNRELLYRMIISQLYY 261
           +++E +++  +  +V++REL + +++ QLYY
Sbjct: 7   EVRESSLESRSSTLVRDRELGFSLLLRQLYY 37


>SB_20681| Best HMM Match : WD40 (HMM E-Value=3.1e-16)
          Length = 91

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 514 HKMSCRAGAFSHCGQLVATGSVDASIKILDVGED 615
           HK      ++   G+ +AT S D S+K+ D+GED
Sbjct: 11  HKDLIHDVSYDFHGRRMATCSSDQSVKVWDLGED 44


>SB_20382| Best HMM Match : WD40 (HMM E-Value=1.7e-23)
          Length = 437

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +1

Query: 514 HKMSCRAGAFSHCGQLVATGSVDASIKI--LDVGEDAREISS 633
           HK+   A   S    L+ TGS D +IKI  LD G+  + I S
Sbjct: 245 HKLPVMAMDISSDSTLIVTGSADKNIKIWGLDFGDCHKSIFS 286


>SB_2014| Best HMM Match : MAM (HMM E-Value=0)
          Length = 2282

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +3

Query: 495 DGIRDFAQDVL--PGWSLQSLRTAGGHWQCRCQYQDFRCGRGCSRNQ 629
           DG + F  ++    G  +QS+    G   C     + RCG GC  ++
Sbjct: 241 DGCKCFTNELTCSSGRCVQSINLCDGVRDCEYGLDELRCGDGCKNSE 287


>SB_23694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = +1

Query: 469 LAPEPATYETAYVTSHKMSCRAGAFSHCGQLVATGSVDASIKILDV 606
           L P P T    Y   H    R       GQ +ATGS D S+K  +V
Sbjct: 18  LQPFPTTEALVY-EGHSGMVRCVTVDPTGQWLATGSDDKSVKFWEV 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,903,818
Number of Sequences: 59808
Number of extensions: 427641
Number of successful extensions: 1002
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)