Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0164
(641 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L02547-1|AAA35691.1| 431|Homo sapiens cleavage stimulation fact... 120 4e-27
BT007138-1|AAP35802.1| 431|Homo sapiens cleavage stimulation fa... 120 4e-27
BC007425-1|AAH07425.1| 431|Homo sapiens cleavage stimulation fa... 120 4e-27
BC001011-1|AAH01011.1| 431|Homo sapiens cleavage stimulation fa... 120 4e-27
AL121914-12|CAI19328.1| 431|Homo sapiens cleavage stimulation f... 120 4e-27
AL121914-11|CAC12718.2| 345|Homo sapiens cleavage stimulation f... 120 4e-27
AL121914-10|CAM45841.1| 142|Homo sapiens cleavage stimulation f... 120 4e-27
BX679664-5|CAH71325.1| 891|Homo sapiens WD repeat domain 47 pro... 34 0.49
BX679664-4|CAH71327.1| 919|Homo sapiens WD repeat domain 47 pro... 34 0.49
BX679664-3|CAH71326.1| 920|Homo sapiens WD repeat domain 47 pro... 34 0.49
BC039254-1|AAH39254.1| 893|Homo sapiens WDR47 protein protein. 34 0.49
BC034964-1|AAH34964.1| 920|Homo sapiens WD repeat domain 47 pro... 34 0.49
AL449266-4|CAI14352.1| 891|Homo sapiens WD repeat domain 47 pro... 34 0.49
AL449266-3|CAI14353.1| 919|Homo sapiens WD repeat domain 47 pro... 34 0.49
AL449266-2|CAI14351.1| 920|Homo sapiens WD repeat domain 47 pro... 34 0.49
AB020700-1|BAA74916.2| 974|Homo sapiens KIAA0893 protein protein. 34 0.49
BC068485-1|AAH68485.1| 383|Homo sapiens WD repeat domain 55 pro... 33 0.65
AK025355-1|BAB15118.1| 383|Homo sapiens protein ( Homo sapiens ... 33 0.65
AK093494-1|BAC04184.1| 476|Homo sapiens protein ( Homo sapiens ... 32 2.0
AL121993-4|CAI22739.1| 943|Homo sapiens WD repeat domain 3 prot... 31 3.5
AF083217-1|AAD45865.1| 943|Homo sapiens WD repeat protein WDR3 ... 31 3.5
AB209201-1|BAD92438.1| 466|Homo sapiens WD repeat-containing pr... 31 3.5
BC126396-1|AAI26397.1| 574|Homo sapiens forkhead box J2 protein. 31 4.6
AF155133-1|AAK49016.1| 526|Homo sapiens FOXJ2 forkhead factor i... 31 4.6
AF155132-1|AAF65927.1| 574|Homo sapiens FOXJ2 forkhead factor p... 31 4.6
X90568-1|CAA62188.1|26926|Homo sapiens titin protein. 30 8.0
>L02547-1|AAA35691.1| 431|Homo sapiens cleavage stimulation factor
protein.
Length = 431
Score = 120 bits (289), Expect = 4e-27
Identities = 62/135 (45%), Positives = 88/135 (65%)
Frame = +1
Query: 199 TKNVVKNRELLYRMIISQLYYDGYQPIAATLAAAVHADPPCPPSDRLLNVMMVGLQHEPD 378
TK +K+R+ LY++IISQL YDGY IA L + C PS++LL+++ +G++++ D
Sbjct: 4 TKVGLKDRQQLYKLIISQLLYDGYISIANGLINEIKPQSVCAPSEQLLHLIKLGMEND-D 62
Query: 379 RKDRLAASNAAEHLLGTTGFDLEYEMDASSLAPEPATYETAYVTSHKMSCRAGAFSHCGQ 558
+ A + GT G DLE++ D +++PE + YET YVTSHK CR +S GQ
Sbjct: 63 TAVQYAIGRSDTVAPGT-GIDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDGQ 121
Query: 559 LVATGSVDASIKILD 603
L+ATGS DASIKILD
Sbjct: 122 LIATGSADASIKILD 136
>BT007138-1|AAP35802.1| 431|Homo sapiens cleavage stimulation
factor, 3' pre-RNA, subunit 1, 50kDa protein.
Length = 431
Score = 120 bits (289), Expect = 4e-27
Identities = 62/135 (45%), Positives = 88/135 (65%)
Frame = +1
Query: 199 TKNVVKNRELLYRMIISQLYYDGYQPIAATLAAAVHADPPCPPSDRLLNVMMVGLQHEPD 378
TK +K+R+ LY++IISQL YDGY IA L + C PS++LL+++ +G++++ D
Sbjct: 4 TKVGLKDRQQLYKLIISQLLYDGYISIANGLINEIKPQSVCAPSEQLLHLIKLGMEND-D 62
Query: 379 RKDRLAASNAAEHLLGTTGFDLEYEMDASSLAPEPATYETAYVTSHKMSCRAGAFSHCGQ 558
+ A + GT G DLE++ D +++PE + YET YVTSHK CR +S GQ
Sbjct: 63 TAVQYAIGRSDTVAPGT-GIDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDGQ 121
Query: 559 LVATGSVDASIKILD 603
L+ATGS DASIKILD
Sbjct: 122 LIATGSADASIKILD 136
>BC007425-1|AAH07425.1| 431|Homo sapiens cleavage stimulation
factor, 3' pre-RNA, subunit 1, 50kDa protein.
Length = 431
Score = 120 bits (289), Expect = 4e-27
Identities = 62/135 (45%), Positives = 88/135 (65%)
Frame = +1
Query: 199 TKNVVKNRELLYRMIISQLYYDGYQPIAATLAAAVHADPPCPPSDRLLNVMMVGLQHEPD 378
TK +K+R+ LY++IISQL YDGY IA L + C PS++LL+++ +G++++ D
Sbjct: 4 TKVGLKDRQQLYKLIISQLLYDGYISIANGLINEIKPQSVCAPSEQLLHLIKLGMEND-D 62
Query: 379 RKDRLAASNAAEHLLGTTGFDLEYEMDASSLAPEPATYETAYVTSHKMSCRAGAFSHCGQ 558
+ A + GT G DLE++ D +++PE + YET YVTSHK CR +S GQ
Sbjct: 63 TAVQYAIGRSDTVAPGT-GIDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDGQ 121
Query: 559 LVATGSVDASIKILD 603
L+ATGS DASIKILD
Sbjct: 122 LIATGSADASIKILD 136
>BC001011-1|AAH01011.1| 431|Homo sapiens cleavage stimulation
factor, 3' pre-RNA, subunit 1, 50kDa protein.
Length = 431
Score = 120 bits (289), Expect = 4e-27
Identities = 62/135 (45%), Positives = 88/135 (65%)
Frame = +1
Query: 199 TKNVVKNRELLYRMIISQLYYDGYQPIAATLAAAVHADPPCPPSDRLLNVMMVGLQHEPD 378
TK +K+R+ LY++IISQL YDGY IA L + C PS++LL+++ +G++++ D
Sbjct: 4 TKVGLKDRQQLYKLIISQLLYDGYISIANGLINEIKPQSVCAPSEQLLHLIKLGMEND-D 62
Query: 379 RKDRLAASNAAEHLLGTTGFDLEYEMDASSLAPEPATYETAYVTSHKMSCRAGAFSHCGQ 558
+ A + GT G DLE++ D +++PE + YET YVTSHK CR +S GQ
Sbjct: 63 TAVQYAIGRSDTVAPGT-GIDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDGQ 121
Query: 559 LVATGSVDASIKILD 603
L+ATGS DASIKILD
Sbjct: 122 LIATGSADASIKILD 136
>AL121914-12|CAI19328.1| 431|Homo sapiens cleavage stimulation
factor, 3' pre-RNA, subunit 1, 50kDa protein.
Length = 431
Score = 120 bits (289), Expect = 4e-27
Identities = 62/135 (45%), Positives = 88/135 (65%)
Frame = +1
Query: 199 TKNVVKNRELLYRMIISQLYYDGYQPIAATLAAAVHADPPCPPSDRLLNVMMVGLQHEPD 378
TK +K+R+ LY++IISQL YDGY IA L + C PS++LL+++ +G++++ D
Sbjct: 4 TKVGLKDRQQLYKLIISQLLYDGYISIANGLINEIKPQSVCAPSEQLLHLIKLGMEND-D 62
Query: 379 RKDRLAASNAAEHLLGTTGFDLEYEMDASSLAPEPATYETAYVTSHKMSCRAGAFSHCGQ 558
+ A + GT G DLE++ D +++PE + YET YVTSHK CR +S GQ
Sbjct: 63 TAVQYAIGRSDTVAPGT-GIDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDGQ 121
Query: 559 LVATGSVDASIKILD 603
L+ATGS DASIKILD
Sbjct: 122 LIATGSADASIKILD 136
>AL121914-11|CAC12718.2| 345|Homo sapiens cleavage stimulation
factor, 3' pre-RNA, subunit 1, 50kDa protein.
Length = 345
Score = 120 bits (289), Expect = 4e-27
Identities = 62/135 (45%), Positives = 88/135 (65%)
Frame = +1
Query: 199 TKNVVKNRELLYRMIISQLYYDGYQPIAATLAAAVHADPPCPPSDRLLNVMMVGLQHEPD 378
TK +K+R+ LY++IISQL YDGY IA L + C PS++LL+++ +G++++ D
Sbjct: 4 TKVGLKDRQQLYKLIISQLLYDGYISIANGLINEIKPQSVCAPSEQLLHLIKLGMEND-D 62
Query: 379 RKDRLAASNAAEHLLGTTGFDLEYEMDASSLAPEPATYETAYVTSHKMSCRAGAFSHCGQ 558
+ A + GT G DLE++ D +++PE + YET YVTSHK CR +S GQ
Sbjct: 63 TAVQYAIGRSDTVAPGT-GIDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDGQ 121
Query: 559 LVATGSVDASIKILD 603
L+ATGS DASIKILD
Sbjct: 122 LIATGSADASIKILD 136
>AL121914-10|CAM45841.1| 142|Homo sapiens cleavage stimulation
factor, 3' pre-RNA, subunit 1, 50kDa protein.
Length = 142
Score = 120 bits (289), Expect = 4e-27
Identities = 62/135 (45%), Positives = 88/135 (65%)
Frame = +1
Query: 199 TKNVVKNRELLYRMIISQLYYDGYQPIAATLAAAVHADPPCPPSDRLLNVMMVGLQHEPD 378
TK +K+R+ LY++IISQL YDGY IA L + C PS++LL+++ +G++++ D
Sbjct: 4 TKVGLKDRQQLYKLIISQLLYDGYISIANGLINEIKPQSVCAPSEQLLHLIKLGMEND-D 62
Query: 379 RKDRLAASNAAEHLLGTTGFDLEYEMDASSLAPEPATYETAYVTSHKMSCRAGAFSHCGQ 558
+ A + GT G DLE++ D +++PE + YET YVTSHK CR +S GQ
Sbjct: 63 TAVQYAIGRSDTVAPGT-GIDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDGQ 121
Query: 559 LVATGSVDASIKILD 603
L+ATGS DASIKILD
Sbjct: 122 LIATGSADASIKILD 136
>BX679664-5|CAH71325.1| 891|Homo sapiens WD repeat domain 47
protein.
Length = 891
Score = 33.9 bits (74), Expect = 0.49
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +1
Query: 514 HKMSCRAGAFSHCGQLVATGSVDASIKIL 600
HK S A+S CGQL+ATGS D +K+L
Sbjct: 632 HKGSIYCVAWSPCGQLLATGSNDKYVKVL 660
>BX679664-4|CAH71327.1| 919|Homo sapiens WD repeat domain 47
protein.
Length = 919
Score = 33.9 bits (74), Expect = 0.49
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +1
Query: 514 HKMSCRAGAFSHCGQLVATGSVDASIKIL 600
HK S A+S CGQL+ATGS D +K+L
Sbjct: 660 HKGSIYCVAWSPCGQLLATGSNDKYVKVL 688
>BX679664-3|CAH71326.1| 920|Homo sapiens WD repeat domain 47
protein.
Length = 920
Score = 33.9 bits (74), Expect = 0.49
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +1
Query: 514 HKMSCRAGAFSHCGQLVATGSVDASIKIL 600
HK S A+S CGQL+ATGS D +K+L
Sbjct: 661 HKGSIYCVAWSPCGQLLATGSNDKYVKVL 689
>BC039254-1|AAH39254.1| 893|Homo sapiens WDR47 protein protein.
Length = 893
Score = 33.9 bits (74), Expect = 0.49
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +1
Query: 514 HKMSCRAGAFSHCGQLVATGSVDASIKIL 600
HK S A+S CGQL+ATGS D +K+L
Sbjct: 632 HKGSIYCVAWSPCGQLLATGSNDKYVKVL 660
>BC034964-1|AAH34964.1| 920|Homo sapiens WD repeat domain 47
protein.
Length = 920
Score = 33.9 bits (74), Expect = 0.49
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +1
Query: 514 HKMSCRAGAFSHCGQLVATGSVDASIKIL 600
HK S A+S CGQL+ATGS D +K+L
Sbjct: 661 HKGSIYCVAWSPCGQLLATGSNDKYVKVL 689
>AL449266-4|CAI14352.1| 891|Homo sapiens WD repeat domain 47
protein.
Length = 891
Score = 33.9 bits (74), Expect = 0.49
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +1
Query: 514 HKMSCRAGAFSHCGQLVATGSVDASIKIL 600
HK S A+S CGQL+ATGS D +K+L
Sbjct: 632 HKGSIYCVAWSPCGQLLATGSNDKYVKVL 660
>AL449266-3|CAI14353.1| 919|Homo sapiens WD repeat domain 47
protein.
Length = 919
Score = 33.9 bits (74), Expect = 0.49
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +1
Query: 514 HKMSCRAGAFSHCGQLVATGSVDASIKIL 600
HK S A+S CGQL+ATGS D +K+L
Sbjct: 660 HKGSIYCVAWSPCGQLLATGSNDKYVKVL 688
>AL449266-2|CAI14351.1| 920|Homo sapiens WD repeat domain 47
protein.
Length = 920
Score = 33.9 bits (74), Expect = 0.49
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +1
Query: 514 HKMSCRAGAFSHCGQLVATGSVDASIKIL 600
HK S A+S CGQL+ATGS D +K+L
Sbjct: 661 HKGSIYCVAWSPCGQLLATGSNDKYVKVL 689
>AB020700-1|BAA74916.2| 974|Homo sapiens KIAA0893 protein protein.
Length = 974
Score = 33.9 bits (74), Expect = 0.49
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +1
Query: 514 HKMSCRAGAFSHCGQLVATGSVDASIKIL 600
HK S A+S CGQL+ATGS D +K+L
Sbjct: 715 HKGSIYCVAWSPCGQLLATGSNDKYVKVL 743
>BC068485-1|AAH68485.1| 383|Homo sapiens WD repeat domain 55
protein.
Length = 383
Score = 33.5 bits (73), Expect = 0.65
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 514 HKMSCRAGAFSHCGQLVATGSVDASIKILDV--GEDAREIS 630
H +CRA AFS GQ + T S D +I +LDV G+ R +S
Sbjct: 83 HLKACRAVAFSEDGQKLITVSKDKAIHVLDVEQGQLERRVS 123
>AK025355-1|BAB15118.1| 383|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21702 fis, clone COL09874. ).
Length = 383
Score = 33.5 bits (73), Expect = 0.65
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 514 HKMSCRAGAFSHCGQLVATGSVDASIKILDV--GEDAREIS 630
H +CRA AFS GQ + T S D +I +LDV G+ R +S
Sbjct: 83 HLKACRAVAFSEDGQKLITVSKDKAIHVLDVEQGQLERRVS 123
>AK093494-1|BAC04184.1| 476|Homo sapiens protein ( Homo sapiens
cDNA FLJ36175 fis, clone TESTI2026453, weakly similar to
PUTATIVE SERINE/THREONINE-PROTEIN KINASE PKWA (EC
2.7.1.-). ).
Length = 476
Score = 31.9 bits (69), Expect = 2.0
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 505 VTSHKMSCRAGAFSHCGQLVATGSVDASIKILDVGED 615
++ H A AFSH GQ++ +GSVD S+ + D +
Sbjct: 235 LSGHCAPVLACAFSHDGQMLVSGSVDKSVIVYDTNTE 271
>AL121993-4|CAI22739.1| 943|Homo sapiens WD repeat domain 3
protein.
Length = 943
Score = 31.1 bits (67), Expect = 3.5
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +1
Query: 514 HKMSCRAGAFSHCGQLVATGSVDASIKI--LDVGE 612
HK+ SH G L+ATGS D ++KI LD G+
Sbjct: 590 HKLPVICMDISHDGALIATGSADRNVKIWGLDFGD 624
>AF083217-1|AAD45865.1| 943|Homo sapiens WD repeat protein WDR3
protein.
Length = 943
Score = 31.1 bits (67), Expect = 3.5
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +1
Query: 514 HKMSCRAGAFSHCGQLVATGSVDASIKI--LDVGE 612
HK+ SH G L+ATGS D ++KI LD G+
Sbjct: 590 HKLPVICMDISHDGALIATGSADRNVKIWGLDFGD 624
>AB209201-1|BAD92438.1| 466|Homo sapiens WD repeat-containing
protein 3 variant protein.
Length = 466
Score = 31.1 bits (67), Expect = 3.5
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +1
Query: 514 HKMSCRAGAFSHCGQLVATGSVDASIKI--LDVGE 612
HK+ SH G L+ATGS D ++KI LD G+
Sbjct: 113 HKLPVICMDISHDGALIATGSADRNVKIWGLDFGD 147
>BC126396-1|AAI26397.1| 574|Homo sapiens forkhead box J2 protein.
Length = 574
Score = 30.7 bits (66), Expect = 4.6
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Frame = -2
Query: 610 LPHLKS*YWHRHCQWPPAVRSD*RLQPGRTSCAKSRMPSHTWPAQGP---GRKRPFRTPS 440
+P + Y ++ Q PP + + QP + +S+ PAQGP G P TPS
Sbjct: 281 IPPSNNYYMYQQQQPPPPQQQQQQQQPPQPPPQQSQPQQQQAPAQGPSAVGGAPPLHTPS 340
Query: 439 QNRLCPKDARQ 407
+ P +Q
Sbjct: 341 TDGCTPPGGKQ 351
>AF155133-1|AAK49016.1| 526|Homo sapiens FOXJ2 forkhead factor
isoform FOXJ2.S protein.
Length = 526
Score = 30.7 bits (66), Expect = 4.6
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Frame = -2
Query: 610 LPHLKS*YWHRHCQWPPAVRSD*RLQPGRTSCAKSRMPSHTWPAQGP---GRKRPFRTPS 440
+P + Y ++ Q PP + + QP + +S+ PAQGP G P TPS
Sbjct: 281 IPPSNNYYMYQQQQPPPPQQQQQQQQPPQPPPQQSQPQQQQAPAQGPSAVGGAPPLHTPS 340
Query: 439 QNRLCPKDARQ 407
+ P +Q
Sbjct: 341 TDGCTPPGGKQ 351
>AF155132-1|AAF65927.1| 574|Homo sapiens FOXJ2 forkhead factor
protein.
Length = 574
Score = 30.7 bits (66), Expect = 4.6
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Frame = -2
Query: 610 LPHLKS*YWHRHCQWPPAVRSD*RLQPGRTSCAKSRMPSHTWPAQGP---GRKRPFRTPS 440
+P + Y ++ Q PP + + QP + +S+ PAQGP G P TPS
Sbjct: 281 IPPSNNYYMYQQQQPPPPQQQQQQQQPPQPPPQQSQPQQQQAPAQGPSAVGGAPPLHTPS 340
Query: 439 QNRLCPKDARQ 407
+ P +Q
Sbjct: 341 TDGCTPPGGKQ 351
>X90568-1|CAA62188.1|26926|Homo sapiens titin protein.
Length = 26926
Score = 29.9 bits (64), Expect = 8.0
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 208 VVKNRELLYRMIISQLYYDGYQPIAATLAAAVHADPPCPPS 330
++ N+E ++R+ +Y G A+ + A DPP PP+
Sbjct: 7350 LIPNKEYIFRVAAENMYGAGEPVQASPITAKYQFDPPGPPT 7390
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,800,652
Number of Sequences: 237096
Number of extensions: 2148561
Number of successful extensions: 5619
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 5276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5606
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7085195460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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