Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0164
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68315-3|CAA92670.1|  430|Caenorhabditis elegans Hypothetical pr...   120   9e-28
Z73978-3|CAA98293.1|  501|Caenorhabditis elegans Hypothetical pr...    31   0.70 
Z81523-5|CAB04240.2|  298|Caenorhabditis elegans Hypothetical pr...    31   0.93 
AY204169-1|AAO39173.1|  414|Caenorhabditis elegans nuclear recep...    29   2.1  
Z70210-8|CAA94154.2|  414|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U23412-5|AAK21467.2|  492|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF067609-9|AAP82661.1|  278|Caenorhabditis elegans Hypothetical ...    29   2.8  
AF039038-9|AAO12408.1|  559|Caenorhabditis elegans Hypothetical ...    29   3.7  
AF039038-8|AAM81097.1|  874|Caenorhabditis elegans Hypothetical ...    29   3.7  
AF039038-7|AAM81098.1|  942|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z37139-8|CAA85487.1|  376|Caenorhabditis elegans Hypothetical pr...    28   4.9  
L23648-7|AAA28031.2|  962|Caenorhabditis elegans Abnormal cell l...    28   6.5  
AF104917-1|AAD22772.1|  962|Caenorhabditis elegans LIN-36 protein.     28   6.5  
U23449-6|AAC24300.2|  937|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AC087079-2|AAK27863.1|   67|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z68315-3|CAA92670.1|  430|Caenorhabditis elegans Hypothetical
           protein F28C6.3 protein.
          Length = 430

 Score =  120 bits (289), Expect = 9e-28
 Identities = 62/135 (45%), Positives = 85/135 (62%), Gaps = 3/135 (2%)
 Frame = +1

Query: 211 VKNRELLYRMIISQLYYDGYQPIAATLAAAVHADPPCPP-SDRLLNVMMVGLQ--HEPDR 381
           +K+RE +YR+II QL+YDG+Q IA  LA  +    P PP SD+L  ++ +  Q   +PD 
Sbjct: 5   IKDREYMYRLIIGQLFYDGHQQIAVNLANTLGCSAPAPPPSDKLFRLVTIAKQFVEDPDY 64

Query: 382 KDRLAASNAAEHLLGTTGFDLEYEMDASSLAPEPATYETAYVTSHKMSCRAGAFSHCGQL 561
           K     S+  +    ++G DLEY+ D   ++ EP+ YET Y+T HK  CRA AF+  G L
Sbjct: 65  KAE-EKSSPMQFEPVSSGLDLEYDADVQPVSSEPSEYETIYLTVHKAPCRAAAFNSDGSL 123

Query: 562 VATGSVDASIKILDV 606
           VATGS D SIKI+DV
Sbjct: 124 VATGSADCSIKIMDV 138


>Z73978-3|CAA98293.1|  501|Caenorhabditis elegans Hypothetical
           protein ZC302.2a protein.
          Length = 501

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 505 VTSHKMSCRAGAFSHCGQLVATGSVDASIKI 597
           ++ H  S     FS+CG+ + TGS D  IK+
Sbjct: 209 ISGHTKSVSVIKFSYCGKYLGTGSADKQIKV 239


>Z81523-5|CAB04240.2|  298|Caenorhabditis elegans Hypothetical
           protein F32H2.4 protein.
          Length = 298

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +1

Query: 472 APEPATYETAYVTSHKMSCRAGAFSHCGQLVATGSVDASIKILDVGE 612
           A EP T   A+  SH++ C A + S  G+ +A G+ DAS  + D+ E
Sbjct: 163 ALEPVTSIQAH--SHQVECLAVSISKDGRKLAVGASDASCSLWDLEE 207


>AY204169-1|AAO39173.1|  414|Caenorhabditis elegans nuclear receptor
           NHR-32 protein.
          Length = 414

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/61 (31%), Positives = 25/61 (40%)
 Frame = +1

Query: 268 YQPIAATLAAAVHADPPCPPSDRLLNVMMVGLQHEPDRKDRLAASNAAEHLLGTTGFDLE 447
           + P+   LA    A PP PPSD  L V  V    E  R+ R     + E +L      L 
Sbjct: 136 FTPLNINLARFTPAIPPSPPSDSSLIVRQVYDFMEQKRRRRAMLCGSLEEILSEQEMTLR 195

Query: 448 Y 450
           +
Sbjct: 196 H 196


>Z70210-8|CAA94154.2|  414|Caenorhabditis elegans Hypothetical
           protein K08H2.8 protein.
          Length = 414

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/61 (31%), Positives = 25/61 (40%)
 Frame = +1

Query: 268 YQPIAATLAAAVHADPPCPPSDRLLNVMMVGLQHEPDRKDRLAASNAAEHLLGTTGFDLE 447
           + P+   LA    A PP PPSD  L V  V    E  R+ R     + E +L      L 
Sbjct: 136 FTPLNINLADFTPAIPPSPPSDSSLIVRQVYDFMEQKRRRRAMLCGSLEEILSEQEMTLR 195

Query: 448 Y 450
           +
Sbjct: 196 H 196


>U23412-5|AAK21467.2|  492|Caenorhabditis elegans Hypothetical
           protein T10F2.4 protein.
          Length = 492

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 514 HKMSCRAGAFSHCGQLVATGSVDASIKILDV 606
           H  + R+ AFS  G  +ATGS D  +K+ D+
Sbjct: 379 HTAAVRSIAFSENGYYLATGSEDGEVKLWDL 409


>AF067609-9|AAP82661.1|  278|Caenorhabditis elegans Hypothetical
           protein C23H5.2 protein.
          Length = 278

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
 Frame = +1

Query: 16  LTFSRFF*SVHHFCFAQCTVDIKFNRRTSNQSCFQNLN----II*NYSRFITILIKMKED 183
           L+ SR F + H   F +CT+   F +     + F  ++    +I N+   I +LIK  + 
Sbjct: 100 LSESRGFRTHHWGVFIECTL-FHFRKVLGQDTYFHRMDALDKVIINWRIIIRLLIKQMKR 158

Query: 184 NVDIDTKNVVKNREL 228
             + D KN   +REL
Sbjct: 159 GFNTDIKNRQASREL 173


>AF039038-9|AAO12408.1|  559|Caenorhabditis elegans Hypothetical
           protein K06A5.8d protein.
          Length = 559

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +1

Query: 514 HKMSCRAGAFSHCGQLVATGSVDASIKILDVGEDAREISS 633
           H+ S    +F+  G L+ATGS D +I+++   ED+  I +
Sbjct: 413 HRGSVYCLSFNPNGDLLATGSNDKTIRLMAFNEDSCRIGA 452


>AF039038-8|AAM81097.1|  874|Caenorhabditis elegans Hypothetical
           protein K06A5.8a protein.
          Length = 874

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +1

Query: 514 HKMSCRAGAFSHCGQLVATGSVDASIKILDVGEDAREISS 633
           H+ S    +F+  G L+ATGS D +I+++   ED+  I +
Sbjct: 679 HRGSVYCLSFNPNGDLLATGSNDKTIRLMAFNEDSCRIGA 718


>AF039038-7|AAM81098.1|  942|Caenorhabditis elegans Hypothetical
           protein K06A5.8b protein.
          Length = 942

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +1

Query: 514 HKMSCRAGAFSHCGQLVATGSVDASIKILDVGEDAREISS 633
           H+ S    +F+  G L+ATGS D +I+++   ED+  I +
Sbjct: 679 HRGSVYCLSFNPNGDLLATGSNDKTIRLMAFNEDSCRIGA 718


>Z37139-8|CAA85487.1|  376|Caenorhabditis elegans Hypothetical
           protein C14B1.4 protein.
          Length = 376

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 460 ASSLAPEPATYET-AYVTSHKMSCRAGAFSHCGQLVATGSVDASIKI 597
           A + A   A Y+    +  H  S  +  FS CG+ + T S D ++KI
Sbjct: 67  AGASASGSANYKLMCTLEGHTKSISSAKFSPCGKYLGTSSADKTVKI 113


>L23648-7|AAA28031.2|  962|Caenorhabditis elegans Abnormal cell
           lineage protein 36 protein.
          Length = 962

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 334 RLLNVMMVGLQHEPDRKDRLA-ASNAAEHLLGTTGFDLEYEMDASSLAPEPAT 489
           RL+N      Q    +K R A A N A+ +  T+  + E ++ +S   PEP T
Sbjct: 583 RLINAKQFKKQEAATKKPRKALAYNLAKGIAATSSTEPEDKVTSSEQTPEPTT 635


>AF104917-1|AAD22772.1|  962|Caenorhabditis elegans LIN-36 protein.
          Length = 962

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 334 RLLNVMMVGLQHEPDRKDRLA-ASNAAEHLLGTTGFDLEYEMDASSLAPEPAT 489
           RL+N      Q    +K R A A N A+ +  T+  + E ++ +S   PEP T
Sbjct: 583 RLINAKQFKKQEAATKKPRKALAYNLAKGIAATSSTEPEDKVTSSEQTPEPTT 635


>U23449-6|AAC24300.2|  937|Caenorhabditis elegans Hypothetical
           protein K06A1.6 protein.
          Length = 937

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -2

Query: 490 TWPAQGPGRKRPFRTPSQNRLCPKDARQHSMQPAYL 383
           TW  +   RKR  RTPS  R   K  RQ  ++P  L
Sbjct: 375 TWILRLANRKRSSRTPSHPRKHKKSHRQFVVKPTDL 410


>AC087079-2|AAK27863.1|   67|Caenorhabditis elegans Hypothetical
           protein Y37E3.3 protein.
          Length = 67

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 297 CCQRRSYGLVAVIVQLAYYHPIEK 226
           CC+R     V +I +L  YHP+EK
Sbjct: 44  CCRRMLLAHVDLIEKLLNYHPLEK 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,558,458
Number of Sequences: 27780
Number of extensions: 313317
Number of successful extensions: 801
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)