Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0164
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    35   6e-04
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.1  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         24   1.4  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 35.1 bits (77), Expect = 6e-04
 Identities = 25/108 (23%), Positives = 51/108 (47%), Gaps = 1/108 (0%)
 Frame = +1

Query: 313 PPCPPSDRLLNVMMVGLQHEPDRKDRLAASNAAEHLLGTTGFDLEYEMDASSLAPEPA-T 489
           P CPP+ RL N     ++HE D  D    ++   H   ++  D++++M  + +  EP   
Sbjct: 210 PLCPPAPRLTN--SNSIKHESDNSDYSHTTDENRH---SSTLDIDHKM-LTPIKSEPIDA 263

Query: 490 YETAYVTSHKMSCRAGAFSHCGQLVATGSVDASIKILDVGEDAREISS 633
           YE   ++  K+S      S C  ++ T  +   ++ ++  +   E+S+
Sbjct: 264 YEMHQISKKKLSPATPKGSKC-SMITTPEIKKEVEDMEYDDIKTELST 310


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = -2

Query: 505 RMPSHTWPAQGPGRKRPFRTPSQNRLCP 422
           R P   WP     R+RP       RL P
Sbjct: 914 RSPGRAWPGDSDIRQRPIPRSDDIRLSP 941


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = +3

Query: 216 KPRASLSDDNKPIVL*RLPAHSCDVGSSRTR*PSVSSQ----RQVAQCHDGGS 362
           +P   L D N+P++  R    +CDV S +++  S++      R +AQ   GGS
Sbjct: 42  EPDTELMDSNEPLLPLRHRRVTCDVLSWQSKWLSINHSACAIRCLAQRRKGGS 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,518
Number of Sequences: 438
Number of extensions: 3864
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)