Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0163
         (504 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0528 + 21782567-21782651,21783355-21783563,21784095-217842...    28   4.9  
02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432...    28   4.9  
07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739...    27   6.5  
06_03_0810 - 24817268-24817350,24817547-24817697,24818441-248185...    27   6.5  
09_04_0297 - 16471315-16471485,16471948-16472013,16473466-164736...    27   8.6  
07_03_1542 + 27577257-27577559,27577653-27577730,27577900-275779...    27   8.6  

>06_03_0528 +
           21782567-21782651,21783355-21783563,21784095-21784232,
           21784520-21784734,21784813-21784967,21785010-21785071,
           21785832-21785834
          Length = 288

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 306 FEPRQSINTVSLSSERNFARSH 241
           F   +++N + LSSERN++R H
Sbjct: 27  FTGLKAVNKIGLSSERNYSRGH 48


>02_05_0232 + 27041793-27042087,27042822-27042943,27043098-27043219,
            27043601-27043705,27043828-27044257,27044356-27044517,
            27044565-27045260,27045349-27046128,27046441-27046654,
            27047621-27047981,27047993-27048140,27048276-27048419,
            27048784-27048888,27049749-27049794,27050089-27050255,
            27050338-27050490,27050654-27050950,27051053-27051220,
            27051298-27051363,27051451-27051927,27052031-27052768,
            27052935-27053120
          Length = 1993

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 232  VERMAPCKVTFRRKRHRIDRLSGLKRVFCIAHPFRCEL 345
            +ER+   K T RR++   + LS LK+V  + H +  EL
Sbjct: 1502 LERLDSSKETKRRRKAESEMLSALKKVHDLEHQYLNEL 1539


>07_03_1567 - 27772815-27773302,27773471-27773561,27773641-27773988,
            27774929-27775110,27775191-27775368,27775453-27775605,
            27775993-27776232,27776369-27776449,27776485-27776730,
            27777151-27777240,27777536-27777778,27778365-27778529,
            27779017-27779080,27779162-27779286,27779383-27779476,
            27779647-27779714,27779798-27779989,27780618-27780752,
            27780847-27780934,27781014-27781107,27781484-27781547,
            27781657-27781708,27781911-27782014,27782099-27782158,
            27782687-27782770,27782892-27783125,27783442-27783864,
            27784675-27784736,27784867-27785521
          Length = 1700

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 110  SRLHVGIDATGYSKW*KVRVNRRKQCTIKM 199
            +RL VGI   GY  W K+R++ +   T K+
Sbjct: 1335 ARLMVGIHWYGYGNWEKIRLDPKLSLTAKI 1364


>06_03_0810 -
           24817268-24817350,24817547-24817697,24818441-24818542,
           24818722-24818802,24818900-24819020,24819284-24819401,
           24819514-24819637,24819898-24819963,24820117-24820407,
           24820455-24820592,24820967-24821116,24821240-24821410,
           24821543-24821746,24821880-24822104,24822461-24822595,
           24822995-24823096,24823586-24823882,24823979-24824167,
           24824581-24824628,24824872-24825070,24825501-24825730,
           24826373-24826568,24826695-24826882
          Length = 1202

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 429 AFNSLHCTVDDNSIFPAAN 373
           AF  LH  +++NS+FP AN
Sbjct: 815 AFQLLHMVLEENSVFPNAN 833


>09_04_0297 -
           16471315-16471485,16471948-16472013,16473466-16473628,
           16473847-16473956
          Length = 169

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 211 RMRMRPGVERMAPCKVTFRRKRHR 282
           +MRMR G+ RM+    + RR+RHR
Sbjct: 20  QMRMRSGLFRMSEMVQSRRRRRHR 43


>07_03_1542 +
           27577257-27577559,27577653-27577730,27577900-27577999,
           27578677-27578819,27579242-27579478
          Length = 286

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 63  FLNKCVFVNFVYIHYYRGCM 122
           FLN CV++   Y  Y+ GC+
Sbjct: 125 FLNGCVYIKEAYSVYWSGCL 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,766,697
Number of Sequences: 37544
Number of extensions: 251271
Number of successful extensions: 669
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)