Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0163
(504 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10701| Best HMM Match : DSPc (HMM E-Value=0) 52 3e-07
SB_54724| Best HMM Match : Rhodanese (HMM E-Value=0.69) 31 0.54
SB_22563| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_58049| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_59672| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_25953| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_36627| Best HMM Match : ABC_tran (HMM E-Value=5.4e-06) 27 6.6
SB_55579| Best HMM Match : Rhodanese (HMM E-Value=9.2e-29) 27 8.8
SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_10701| Best HMM Match : DSPc (HMM E-Value=0)
Length = 365
Score = 52.0 bits (119), Expect = 3e-07
Identities = 29/83 (34%), Positives = 39/83 (46%)
Frame = +2
Query: 203 MDSECECDLVSKEWLLAKLRSDERDTVLIDCRGSNEYSVSHIRSAVNFSIPTIMLRRLAA 382
MDS +S + R+ L+DCR ++V+HIR AVN P I+ RRL
Sbjct: 39 MDSLESMQAISPLTTINMTRASPTRCKLVDCRSFMAFNVAHIRGAVNIHCPPILKRRLLR 98
Query: 383 GKIELSSTVQCKELKARINHCRT 451
G LS+ V C E K + T
Sbjct: 99 GSATLSALVSCPESKVILEEADT 121
>SB_54724| Best HMM Match : Rhodanese (HMM E-Value=0.69)
Length = 115
Score = 31.1 bits (67), Expect = 0.54
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +2
Query: 281 VLIDCRGSNEYSVSHIRSAVNFSIPTIMLRRLAAGKIELSSTVQCKE 421
++ID R EY+ +H+ +++N ++ RRL KI + ++ E
Sbjct: 21 LIIDSRSFLEYNDAHVINSINIGCSKLIKRRLITNKISIQELLKTGE 67
>SB_22563| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 30.7 bits (66), Expect = 0.71
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +2
Query: 269 ERDTVLIDCRGSNEYSVSHIRSAVN 343
ER VL+D R +E+SVSH+ +A++
Sbjct: 52 ERKLVLLDTRSKSEFSVSHLPNAIS 76
>SB_58049| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 443
Score = 27.9 bits (59), Expect = 5.0
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 186 VLSRCLWIQNANATWCRKNGSL 251
++ RC+ IQNA +WCR + ++
Sbjct: 22 IILRCITIQNALESWCRIHSTI 43
>SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1446
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = -1
Query: 327 MCDTEYSFEPRQSINTVSLSSERNFARSH----SFDTRSHSH 214
M DT S+ RQ + + ER F R H SFD+ +HSH
Sbjct: 1291 MSDTRMSYHYRQGSS--HSADEREFRRRHASQQSFDSSTHSH 1330
>SB_59672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 27.5 bits (58), Expect = 6.6
Identities = 18/67 (26%), Positives = 26/67 (38%)
Frame = -1
Query: 285 NTVSLSSERNFARSHSFDTRSHSHSESIGILIVHCFLLFTRTFYHFEYPVASIPTCNLDN 106
NT S + RSHS H+H S ++ HC T T H+ + + D+
Sbjct: 121 NTTRSHSRHDTTRSHS--RHDHTHDTSTLMVRPHCTTRITLTTRHYTITLTTRSHSRHDH 178
Query: 105 NECTQNL 85
T L
Sbjct: 179 THDTSTL 185
>SB_25953| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 482
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 192 IVHCFLLFTRTFYHFEYPVASIPTCNLDNNECTQ 91
I+HC + + YP + TC L+NN TQ
Sbjct: 182 ILHCQATLSCFSINMHYPSDHVITCELNNNTYTQ 215
>SB_36627| Best HMM Match : ABC_tran (HMM E-Value=5.4e-06)
Length = 240
Score = 27.5 bits (58), Expect = 6.6
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Frame = +2
Query: 230 VSKEWLLAKLRSDERDTVLIDCRGSNE-YSVSHIRSAVNFSIP----TIMLRRLAAGKIE 394
V E L ++++DERDT ++ + ++ Y SHI ++F + T +L R GK
Sbjct: 65 VLAEGSLEQVQNDERDTDMLQVQQLHQYYGGSHILRGLSFDVKVGEVTCLLGRNGVGKTT 124
Query: 395 L 397
L
Sbjct: 125 L 125
>SB_55579| Best HMM Match : Rhodanese (HMM E-Value=9.2e-29)
Length = 269
Score = 27.1 bits (57), Expect = 8.8
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +2
Query: 266 DERDTV-LIDCRGSNEYSVSHIRSAVNFSIPTIMLRRLAAGKIELSSTVQCKELK--ARI 436
DE D +IDCR E+ H++ A+N ML+ + T +CKE K I
Sbjct: 108 DEIDEYYIIDCRYPFEFDGGHVKGAINIYTKDEMLK-------QFIDTPKCKEGKRVVVI 160
Query: 437 NHC 445
HC
Sbjct: 161 FHC 163
>SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 459
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 294 QSINTVSLSSERNFARSHSFDTRSHSHSESIGILIVHCF 178
+ + T+S S + + S SFD R H S G L VH F
Sbjct: 334 EPVYTISFSPDGRYLASGSFDKRVHIWSTQTGNL-VHSF 371
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,607,188
Number of Sequences: 59808
Number of extensions: 319727
Number of successful extensions: 1006
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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