Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0163
         (504 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23178-3|AAK68299.1|  657|Caenorhabditis elegans Vh1 dual-specif...    42   3e-04
AY585194-1|AAS91377.1|  657|Caenorhabditis elegans VH1-like phos...    42   3e-04
AF036685-1|AAB88308.2|  369|Caenorhabditis elegans Lateral-signa...    36   0.013
U88309-4|AAB42330.1|  256|Caenorhabditis elegans Hypothetical pr...    31   0.36 
AC006681-5|AAK85491.1|  225|Caenorhabditis elegans Hypothetical ...    31   0.36 
Z49907-3|CAA90085.1|  225|Caenorhabditis elegans Hypothetical pr...    30   0.83 
AF039048-1|AAB94237.2|  480|Caenorhabditis elegans Cell division...    29   1.4  
Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical pr...    27   5.8  
AF038618-6|AAB92067.2|  402|Caenorhabditis elegans Hypothetical ...    27   5.8  
Z48795-1|CAA88725.1|  372|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z35641-1|CAA84706.2|  863|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AF078783-6|AAC26923.1|  473|Caenorhabditis elegans Hypothetical ...    27   7.7  
AF039038-5|AAK29711.1|  604|Caenorhabditis elegans Cell division...    27   7.7  

>U23178-3|AAK68299.1|  657|Caenorhabditis elegans Vh1
           dual-specificity phosphatasefamily protein 1, isoform a
           protein.
          Length = 657

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 18/50 (36%), Positives = 30/50 (60%)
 Frame = +2

Query: 245 LLAKLRSDERDTVLIDCRGSNEYSVSHIRSAVNFSIPTIMLRRLAAGKIE 394
           L A +R     T+++DCRG  EY+ SH+R ++N     ++ RRL   K++
Sbjct: 14  LAALIREAPDTTLVVDCRGFTEYNESHVRHSMNAFFSKLIRRRLFENKLD 63


>AY585194-1|AAS91377.1|  657|Caenorhabditis elegans VH1-like
           phosphatase 1 protein.
          Length = 657

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 18/50 (36%), Positives = 30/50 (60%)
 Frame = +2

Query: 245 LLAKLRSDERDTVLIDCRGSNEYSVSHIRSAVNFSIPTIMLRRLAAGKIE 394
           L A +R     T+++DCRG  EY+ SH+R ++N     ++ RRL   K++
Sbjct: 14  LAALIREAPDTTLVVDCRGFTEYNESHVRHSMNAFFSKLIRRRLFENKLD 63


>AF036685-1|AAB88308.2|  369|Caenorhabditis elegans
           Lateral-signal-induced phosphataseprotein 1 protein.
          Length = 369

 Score = 36.3 bits (80), Expect = 0.013
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +2

Query: 269 ERDTVLIDCRGSNEYSVSHIRSAVNFSIPTIMLRRLAAGKIELSSTVQCKELKARINHC 445
           ER+ +++DCR + +      R   +  +P ++ RRL  G + LS+    K+L    + C
Sbjct: 26  ERNVIVLDCRSNGDSVKRANRFFCSLRLPALLQRRLMGGSMRLSTVPDLKDLNNSPDQC 84


>U88309-4|AAB42330.1|  256|Caenorhabditis elegans Hypothetical
           protein T23B3.3 protein.
          Length = 256

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +2

Query: 182 QCTIKMPMDSECECDLVSKEWLLAKLRSDERDTVLIDCRGSNEYSVSHI 328
           Q T  M    + EC    KE L   L  + +DT L+  RG  +YSV+ +
Sbjct: 142 QATEYMATKEKLECSKKFKELLDKALAKEPKDTALLHLRGRYKYSVASL 190


>AC006681-5|AAK85491.1|  225|Caenorhabditis elegans Hypothetical
           protein R13H9.1 protein.
          Length = 225

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +2

Query: 182 QCTIKMPMDSECECDLVSKEWLLAKLRSDERDTVLIDCRGSNEYSVSHI 328
           Q T  M    + EC    KE L   L  + +DT L+  RG  +YSV+ +
Sbjct: 89  QATEYMATKEKLECSKKFKELLDKALAKEPKDTALLHLRGRYKYSVASL 137


>Z49907-3|CAA90085.1|  225|Caenorhabditis elegans Hypothetical
           protein B0491.3 protein.
          Length = 225

 Score = 30.3 bits (65), Expect = 0.83
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +2

Query: 182 QCTIKMPMDSECECDLVSKEWLLAKLRSDERDTVLIDCRGSNEYSVSHI 328
           Q T  M    + EC    KE L   L  + +DT ++  RG  +YSV+ +
Sbjct: 89  QATEYMATKEKLECSKKFKELLDKTLAKEPKDTAVLHLRGRYKYSVASL 137


>AF039048-1|AAB94237.2|  480|Caenorhabditis elegans Cell division
           cycle related protein25.2 protein.
          Length = 480

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 281 VLIDCRGSNEYSVSHIRSAVN 343
           +LIDCR   EY+  HI++A+N
Sbjct: 248 ILIDCRYPYEYNRGHIKNAIN 268


>Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical
           protein F31B12.2 protein.
          Length = 1089

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = -1

Query: 339 TAERMCDTEYSFEP---RQSINTVSLSSERNFARSHSFDTRSHS 217
           T +R+   ++ ++P    ++ ++ SL + RNF +S SFD R  S
Sbjct: 473 TKKRVAVVDHVYKPITDPRAHSSCSLGNNRNFGKSKSFDRREDS 516


>AF038618-6|AAB92067.2|  402|Caenorhabditis elegans Hypothetical
           protein F42G8.6 protein.
          Length = 402

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 269 ERDTVLIDCRGSNEYSVSHIRSAVNFSI 352
           E+  VL+D R S E+ ++H+  A+N ++
Sbjct: 303 EQKPVLLDTRPSLEFEIAHLPEAINVTL 330


>Z48795-1|CAA88725.1|  372|Caenorhabditis elegans Hypothetical
           protein R05H5.2 protein.
          Length = 372

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
 Frame = +2

Query: 188 TIKMPMDSECECDLVSKEWLLAKLRSDER--DTVLIDCRGSNEYSVSHIRSAVN 343
           T++ P         +S     + LR   R    ++ DCR   EY   HI+ AVN
Sbjct: 141 TVESPQRESSSFRSISATVFASLLRDRSRCLQLIIFDCRYPFEYFGGHIKGAVN 194


>Z35641-1|CAA84706.2|  863|Caenorhabditis elegans Hypothetical
           protein C38H2.1 protein.
          Length = 863

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 241 MAPCKVTFRRKRHRIDR 291
           MAPC VT+RR  +RI++
Sbjct: 215 MAPCMVTYRRMSNRIEQ 231


>AF078783-6|AAC26923.1|  473|Caenorhabditis elegans Hypothetical
           protein H10E21.5 protein.
          Length = 473

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 300 PRQSINTVSLSSERNFARSHSFDTRSHSHSESIG 199
           P   + +   +S+ + ++  SFD   H HSES G
Sbjct: 312 PSADVISPEANSDTSDSQGFSFDNSEHHHSESFG 345


>AF039038-5|AAK29711.1|  604|Caenorhabditis elegans Cell division
           cycle related protein25.1 protein.
          Length = 604

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +2

Query: 269 ERDTVLIDCRGSNEYSVSHIRSAVN 343
           ++  +++DCR   EY   H++ A+N
Sbjct: 306 DKKYIIVDCRFPFEYKGGHVKGAIN 330


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,531,117
Number of Sequences: 27780
Number of extensions: 237765
Number of successful extensions: 658
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)