Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0163
         (504 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.59 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.4  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    21   7.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.3  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.6  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 24.6 bits (51), Expect = 0.59
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
 Frame = +2

Query: 278  TVLIDCRGSNEYSVSHIRSAVNFSIPTIMLR--RLAAGKIELSSTVQCKELKARINHCRT 451
            T  IDC   +EY    ++   N   P+++ R  + +A   + ++ V  +  +AR N   T
Sbjct: 960  TTTIDCSTQSEYYELEVKDQKNGKPPSVVSRSTQTSANNDKDTNAVVTQSKEARDNITAT 1019

Query: 452  RGI--FVLYGDGPSRDPD 499
            + +      G+GP    D
Sbjct: 1020 KQLNNKARIGNGPINQSD 1037


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 200  PMDSECECDLVSKEWLLAKLRSDERDTVLIDCRGSNEYSVS 322
            P  SE ECD+ S + L   LRS            S++YS++
Sbjct: 1882 PELSEAECDIDSLKKLKLGLRSSLWSRPSTQNNPSSDYSIA 1922


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 200  PMDSECECDLVSKEWLLAKLRSDERDTVLIDCRGSNEYSVS 322
            P  SE ECD+ S + L   LRS            S++YS++
Sbjct: 1878 PELSEAECDIDSLKKLKLGLRSSLWSRPSTQNNPSSDYSIA 1918


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 214 MRMRPGVERMAPCKVTFRRKRHRIDRLSGLKR 309
           M +RP        K T +  RH+ DR S LKR
Sbjct: 1   MAIRPVYRPTIVKKRTKKFIRHQSDRYSKLKR 32


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 285 NTVSLSSERNFARSHSFDTRSHSH 214
           ++V   S  N +R HS  + SH H
Sbjct: 383 SSVHSDSGENNSRGHSGQSSSHHH 406


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 188 YTVFFCLHGLFTTLNTLLHQYLHA 117
           Y +  CL+   TT+N +L+  + A
Sbjct: 298 YPLTGCLYYFSTTINPILYNVMSA 321


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,794
Number of Sequences: 438
Number of extensions: 2724
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)