Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0163
         (504 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g46984.1 68414.m05220 F-box protein-related contains weak hit...    28   4.1  
At5g27120.1 68418.m03237 SAR DNA-binding protein, putative stron...    27   7.2  
At3g17620.1 68416.m02251 F-box family protein contains Pfam prof...    27   9.5  
At3g03740.1 68416.m00379 speckle-type POZ protein-related contai...    27   9.5  
At2g41710.2 68415.m05155 ovule development protein, putative sim...    27   9.5  
At2g41710.1 68415.m05154 ovule development protein, putative sim...    27   9.5  

>At1g46984.1 68414.m05220 F-box protein-related contains weak hit to
           Pfam PF00646: F-box domain; contains weak hit to TIGRFAM
           TIGR01640 : F-box protein interaction domain
          Length = 370

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 194 KMPMDSECECDLVSKEWLLAKLRSDERDTVLI 289
           ++PM+S   C LVSK+W      SD  ++ LI
Sbjct: 35  RLPMNSIAICRLVSKQWASILQSSDFTESFLI 66


>At5g27120.1 68418.m03237 SAR DNA-binding protein, putative strong
           similarity to SAR DNA-binding protein-1 [Pisum sativum]
           GI:3132696; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 533

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 468 NTNIPRVRQWFILAFNSLHCTVDDNSIFPAANRL 367
           NT   RVR+WF   F  L   V DN ++  A +L
Sbjct: 175 NTYAMRVREWFGWHFPELAKIVQDNILYAKAVKL 208


>At3g17620.1 68416.m02251 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 398

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 285 NTVSLSSERNFARSHSFDTRSHSHSESIGILIVHCFLLFT 166
           N  +LS +R+F + H     +   SE   ++++HC +  T
Sbjct: 31  NWKTLSKKRSFTKKHLAQEATSRESEFKVVMVLHCKVYLT 70


>At3g03740.1 68416.m00379 speckle-type POZ protein-related contains
           Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
           MATH domain; similar to Speckle-type POZ protein
           (SP:O43791) [Homo sapiens]
          Length = 465

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 309 SFEPRQSINTVSLSSERNFARSHSFDTRSHSHSESIGI 196
           +FE      T SLS  +    SHSF  + +S ++ IGI
Sbjct: 27  NFEMPSPPTTTSLSVTQTINGSHSFTIKGYSLAKGIGI 64


>At2g41710.2 68415.m05155 ovule development protein, putative
           similar to ovule development protein AINTEGUMENTA
           (GI:1209099) [Arabidopsis thaliana];Pfam domain
           (PF00847)
          Length = 428

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 128 IDATGYSKW*KVRVNRRKQCTIKMPMDSECE 220
           ID TGY KW     NR+ + + K   D+  E
Sbjct: 225 IDLTGYIKWWGANKNRQPESSSKASEDANVE 255


>At2g41710.1 68415.m05154 ovule development protein, putative
           similar to ovule development protein AINTEGUMENTA
           (GI:1209099) [Arabidopsis thaliana];Pfam domain
           (PF00847)
          Length = 423

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 128 IDATGYSKW*KVRVNRRKQCTIKMPMDSECE 220
           ID TGY KW     NR+ + + K   D+  E
Sbjct: 220 IDLTGYIKWWGANKNRQPESSSKASEDANVE 250


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,600,263
Number of Sequences: 28952
Number of extensions: 210545
Number of successful extensions: 575
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)