Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0162
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                30   0.019
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.8  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   3.7  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   4.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   8.6  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   8.6  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 30.3 bits (65), Expect = 0.019
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +2

Query: 407 PPNHGPEMRGPPNHGPEMRGLPNHGPDMRGPSNHGPEMRGPPNH 538
           PP++ P    P  + P     P+H     G    GP M GPP+H
Sbjct: 313 PPSYHPHQHHPSQYHPHRGSSPHH---QHGNHTMGPTM-GPPHH 352



 Score = 29.1 bits (62), Expect = 0.043
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +2

Query: 317 PPNHGPEMRGPLNHGPEMRSPPNHGPEMRSPPNHGPEMRGPPNH 448
           PP++ P    P  + P   S P+H          GP M GPP+H
Sbjct: 313 PPSYHPHQHHPSQYHPHRGSSPHH---QHGNHTMGPTM-GPPHH 352


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 13/55 (23%), Positives = 21/55 (38%)
 Frame = +2

Query: 227 PPNHGPEMRGLPNHGPEMRGPSNHGPEMRGPPNHGPEMRGPLNHGPEMRSPPNHG 391
           P +  P  +  P+  P+     +     +GPP  GP    P  +  +M   P  G
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPASG 70



 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/48 (25%), Positives = 18/48 (37%)
 Frame = +2

Query: 17  PPHRGPEARGPPHHGPEMRALPNHGPEMRGPPNHGPEMRGPLNHGPEM 160
           P    P  +  PH  P+     +     +GPP  GP    P  +  +M
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQM 63


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
 Frame = +2

Query: 461 RGLPNHGPDMRGPSNHGPEMRGPPNHGPEMRGPPNHRPEMRGPLNHGPEMRG-----PLN 625
           +G+P H     G     P  R PP +  +MR    ++ +     +HG  M G       +
Sbjct: 59  QGVPGHHYGAAGSQQDMPYPRFPPYNRMDMRNATYYQHQQ----DHGSGMDGMGGYRSAS 114

Query: 626 HGPEMRGPPNHGPEMRGPPN 685
             P M G   H P   G P+
Sbjct: 115 PSPGM-GHMGHTPTPNGHPS 133


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/36 (27%), Positives = 14/36 (38%)
 Frame = +2

Query: 464 GLPNHGPDMRGPSNHGPEMRGPPNHGPEMRGPPNHR 571
           G+P+        S    E   P  H  ++  PP HR
Sbjct: 30  GIPHSAESSASNSPDHYERFSPSTHLMDLSSPPEHR 65



 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 185 EMRSPSNHGPEMRGPPNH 238
           E  SPS H  ++  PP H
Sbjct: 47  ERFSPSTHLMDLSSPPEH 64


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +1

Query: 88  WTRNARSP*PWTRNARSP*SWTRNERSTYSWTRNEKSL 201
           W +N   P  + +NA+S    T    + Y W   +K++
Sbjct: 114 WLKNMWRPDSFFKNAKSVTFQTMTIPNHYLWLYKDKTI 151


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 148 WTRNERSTYSWTRNEKSL*SRARNERSS*PR 240
           +TR++  TY   R+ ++L     N  +S PR
Sbjct: 257 YTRDQSETYDVLRSWRNLMDEHSNRTNSDPR 287


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,359
Number of Sequences: 438
Number of extensions: 9137
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)