Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0161
         (714 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O77475 Cluster: CG4585-PA; n=3; Diptera|Rep: CG4585-PA ...    60   4e-08
UniRef50_P29993 Cluster: Inositol 1,4,5-trisphosphate receptor; ...    33   5.3  

>UniRef50_O77475 Cluster: CG4585-PA; n=3; Diptera|Rep: CG4585-PA -
           Drosophila melanogaster (Fruit fly)
          Length = 392

 Score = 60.5 bits (140), Expect = 4e-08
 Identities = 22/36 (61%), Positives = 28/36 (77%)
 Frame = +1

Query: 607 RALSYEDVVWIPCSVNPLCHPTVKALMVDHINHYIY 714
           R  SYED  WI C +NPLCH TVKA+++DH NHY++
Sbjct: 90  RQPSYEDHTWISCDINPLCHVTVKAILLDHTNHYLF 125


>UniRef50_P29993 Cluster: Inositol 1,4,5-trisphosphate receptor; n=8;
            Coelomata|Rep: Inositol 1,4,5-trisphosphate receptor -
            Drosophila melanogaster (Fruit fly)
          Length = 2838

 Score = 33.5 bits (73), Expect = 5.3
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = +1

Query: 613  LSYEDVVWIPCSVNPLCHPTVKALMVDHINH 705
            LS +D+V I C  +PLC P VK   VD +NH
Sbjct: 1505 LSLDDIVTIIC--HPLCMPEVKEAYVDFLNH 1533


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 661,448,089
Number of Sequences: 1657284
Number of extensions: 12003069
Number of successful extensions: 18486
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18486
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57438021881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)