Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0161
         (714 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         25   0.94 
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    25   0.94 
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    25   0.94 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.2  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   2.2  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   6.6  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   6.6  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 392 GFVLKHNRSDSAHRTSKHVYTSNP 321
           G ++ HN  DS HR + + +  +P
Sbjct: 212 GLIVYHNSDDSFHRLTSNTFDYDP 235


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 392 GFVLKHNRSDSAHRTSKHVYTSNP 321
           G ++ HN  DS HR + + +  +P
Sbjct: 212 GLIVYHNSDDSFHRLTSNTFDYDP 235


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 392 GFVLKHNRSDSAHRTSKHVYTSNP 321
           G ++ HN  DS HR + + +  +P
Sbjct: 212 GLIVYHNSDDSFHRLTSNTFDYDP 235


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 525 YESAVLQHRNI*DFNANHIP 584
           +ES   Q++NI + +A HIP
Sbjct: 409 FESVTSQYKNIREDDARHIP 428


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +1

Query: 610 ALSYEDVVWIPCSVNPLCHPTVKALMVDHINHYI 711
           AL Y    WI  S     HP  KA + D I + I
Sbjct: 185 ALGYLKDAWIGRSFIDYVHPKDKATLADQIKNGI 218


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +1

Query: 610 ALSYEDVVWIPCSVNPLCHPTVKALMVDHINHYI 711
           AL Y    WI  S     HP  KA + D I + I
Sbjct: 180 ALGYLKDAWIGRSFIDYVHPKDKATLADQIKNGI 213


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -2

Query: 386 VLKHNRSDSAHRTSKHVYTSN 324
           ++  N  DS HR S H    N
Sbjct: 212 IIYQNADDSFHRLSSHTLNHN 232


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 55  NLIPSDKCYTWDV 93
           NL+P   CYT DV
Sbjct: 364 NLLPPGVCYTCDV 376


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,237
Number of Sequences: 438
Number of extensions: 3817
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)