Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0161
         (714 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40860.1 68415.m05044 protein kinase family protein / protein...    29   3.1  
At3g25720.1 68416.m03201 hypothetical protein                          29   4.0  

>At2g40860.1 68415.m05044 protein kinase family protein / protein
           phosphatase 2C ( PP2C) family protein contains Pfam
           PF00481: Protein phosphatase 2C domain; contains Pfam
           PF00069: Protein kinase domain; similar to partner of
           PIX 1 (GI:21702695) [Homo sapiens]
          Length = 658

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 609 PESRCGRFLECGLR*SLKCFYAVILHSHIQERVHEDAVND 490
           P   CG F  CG R S++  + +I H   +E +H  A+ D
Sbjct: 389 PVISCGSFATCGRRESMEDTHFIIPHMCNEESIHLFAIFD 428


>At3g25720.1 68416.m03201 hypothetical protein 
          Length = 282

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 704 WLM*STIKALTVGWHKGFTLQGIQTTS-S*LRARSLVVGDSWNVVCV 567
           W + S   +L V WH+   LQG+   S S       +V DSWN  C+
Sbjct: 45  WRLFSGGGSLWVDWHRYHHLQGLGDASVSKFWTSQELVSDSWNWKCL 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,465,977
Number of Sequences: 28952
Number of extensions: 272673
Number of successful extensions: 461
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)