Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0157
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    31   0.23 
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    30   0.31 
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    29   0.54 
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    29   0.54 
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    29   0.54 
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    29   0.71 
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    29   0.94 
SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual    28   1.6  
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    27   2.2  
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    27   2.9  
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    26   5.0  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.0  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    26   5.0  
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    26   5.0  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    26   5.0  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    26   6.6  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    25   8.7  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   8.7  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    25   8.7  

>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +3

Query: 330 SSPGNMSGAHSDINSPENSMPGSPLGPKSPSTPKSSDVGSNPGSPTFTQQYSPVPNSMN 506
           +S   +S    D++SP ++ PGS     + STPK++ V  N G P      +   NS N
Sbjct: 56  TSTNQISSLKVDVSSPPSTAPGS-----AGSTPKTTPVSLNAGVPPSNTGANITTNSNN 109


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = +3

Query: 390 PGSPLGPKSPSTPKSSDVGSNPGSPT----FTQQYSPVPNSMN 506
           PG  L   +P TP S ++G+   +PT     T  Y+P  N+ N
Sbjct: 735 PGPSLQVNAPYTPTSGELGNKVSNPTKEFVSTSSYAPAANTRN 777


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
 Frame = +3

Query: 306 TSNQHRGASSPGNMSGAHSDI-NSPENSMPGSPLGPKS---PSTPKSSDVGS 449
           TS+  R   S GN+SGA + + N   NSMP  P+ P +   P T +  D  S
Sbjct: 658 TSHNGRHGGSNGNISGAKTPMTNYTINSMPSLPVFPPAFIVPGTHQKLDESS 709


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +3

Query: 306 TSNQHRGASSPGNMSGAHSDINSPENSMP-GSPLGPKSPSTPKSSDVGSNPGSPTFTQQY 482
           T++   GA++  N SG+  +  S  NS   G P    + +TP ++  GS  G P  T   
Sbjct: 124 TASSATGAATT-NPSGSTFNFGSSNNSFNFGKPASTTNTTTPAAASTGSLFGKPAATGTT 182

Query: 483 SPVP 494
           S  P
Sbjct: 183 SNAP 186


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 442 WVPIQDHLHSLNSTVLFPIV 501
           W+P+Q H+H L  T L P V
Sbjct: 54  WLPLQQHMHQLRHTGLLPAV 73


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +3

Query: 309  SNQHRGASSPGNMSGAHSDINSPENSMPGSPLGPKSPSTPKSSDV-GSNPGSPT 467
            SN +  A S G +S     + +PE++M  + L P SPS  K S++  S PGSP+
Sbjct: 1373 SNPNSDAQS-GLISSLQKKLYNPESNMEFTGLKPLSPS--KISNLPSSQPGSPS 1423


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +3

Query: 333 SPGNMSGAHSDINSPENSMPGSPLGPKSPSTPKSSDVGSNPGS 461
           SP      H +I SPE+S  G+P  P S S    ++V S P S
Sbjct: 455 SPEAKEHTHKNI-SPESSRFGTPSDPNSSSQSLGNEVLSRPNS 496


>SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +3

Query: 321 RGASSPGNMSGAHSDINSPENSMPGSPLGPKSPSTPKSSDVGSN 452
           + A+SP     A S +NS     P SP  P S ST K S+   N
Sbjct: 211 KNANSPVAPPSASSQLNSSN---PSSPFRPLSASTDKQSNTSLN 251


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = +3

Query: 339 GNMSGAHSDINSPENSMPGSPLGPKSPSTPKSSDVGSNPGSPTFTQQYSPVPN 497
           G     HS  N PE+  P   LG    S   S+ +  NP S T     S VP+
Sbjct: 410 GRSPNEHSPSNHPEDFPPSFSLGSNPSSGAASAVITRNP-SETSLADLSRVPS 461


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 369 NSPENSMPGSPLGPKSPSTPKSSDVGSNPGS 461
           +SP+ +   SP+   +PSTP S  VGS P S
Sbjct: 220 SSPQTTQDSSPILTMAPSTPVS--VGSTPPS 248


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = +3

Query: 306 TSNQHRGASSPGNMSGAHSDINSPE---NSMPGSPLGPKSPSTPKSSDVGSNPGSPTFTQ 476
           T N +  + S    S ++    SP    +S+ GS     +PS   SS +G+N  S   TQ
Sbjct: 259 TKNDYSSSRSKTTASSSNGTFASPSFNISSLSGSSNIGTAPSYEISSSIGANVSSLAHTQ 318

Query: 477 Q 479
           +
Sbjct: 319 R 319


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
 Frame = +3

Query: 306 TSNQHRGAS-SPGNMSGAHSDINSPENSMPGSPLGPKSPSTPK--SSDVGSNPGSPTFTQ 476
           T +  R AS + GN   +    + P  S P  P  PK P+ P   +  + S PGS     
Sbjct: 76  TGSTPRTASPAVGNQDYSKPSYSQPSYSQPSQP--PKEPALPSRGTPSLPSRPGSRPSVL 133

Query: 477 QYSPVP 494
               VP
Sbjct: 134 NQEQVP 139


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = +3

Query: 309 SNQHRGAS-SPGNMSGAHSDINSPENSMPGSPLGPKSPSTPKSSD---VGSNPGSPTFTQ 476
           SN    +S  P +  G+  + + P + M  +    +SPSTP + D     S+P   + TQ
Sbjct: 197 SNPSTASSLEPSSPLGSEDECHPPTSDMQPTHELNESPSTPTAPDFPHYNSSPSELSPTQ 256

Query: 477 QYSPVPN 497
           + S + N
Sbjct: 257 RRSSISN 263


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 420 STPKSSDVGSNPGSPTFTQQYSPVPNSMNE 509
           +TP S+D G N  S TF    SP P S  E
Sbjct: 46  ATPSSADAGYNAPSSTFESVRSP-PESRRE 74


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +1

Query: 448 PIQDHLHSLNSTVLFPIV*MKDQRLHKVLVGPQSLLLVPQILDLDQHHQIH 600
           P  D + S +ST +   V  K +R     + P+S  +  Q+ +  +  Q+H
Sbjct: 257 PATDPVCSASSTTVNSAVSTKKRRRESSTISPESAYVAAQLQNPSEREQVH 307


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +3

Query: 366 INSPENSMPGSPLGPKSPSTPKSSDVGSNPGSPTFTQQYSPVPNSMNE 509
           +N   ++ P  P  P +  TP SS   +     +     SPVP S  E
Sbjct: 243 LNVKNSAWPLQPYSPPANETPASSSSSAKARPVSVPDMSSPVPASSVE 290


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 354 AHSDINSPENSMPGSPLGPKSPSTPKSSDVGSNPGSPTFTQQYSPVPN 497
           +H +I+SP        L P S  +  S    S+PGS     +++ V N
Sbjct: 127 SHVNISSPSAPSLSDNLFPGSSFSASSQQNPSSPGSNDIKSEFAAVKN 174


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +3

Query: 327 ASSPGNMSGAHSDINSPENSMPGSPLGPKSPSTPKSSDVGSNPGSPTFTQQYSPVP 494
           +S+P +   + S +N+P  S P S + P     P S+   + P + +    Y+P P
Sbjct: 140 SSAPASQEPSASGVNAPTVSAPNSMVSPPPSFQPPSA---AAPAT-SLPSDYNPPP 191


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 11/63 (17%)
 Frame = +3

Query: 354 AHSDINSPENSMPGSPLGPKSPSTPKSSDVG-SNPGSP--------TFTQQYSPVPN--S 500
           ++S +N   N+  G+P     PS+P  S  G S P +P        T++Q  SPV    +
Sbjct: 395 SNSVLNYDSNNFSGTPQINVVPSSPSKSQSGPSLPANPLLQTDISITYSQSASPVSGQPA 454

Query: 501 MNE 509
           MNE
Sbjct: 455 MNE 457


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,493,627
Number of Sequences: 5004
Number of extensions: 42996
Number of successful extensions: 166
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)