Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0157
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M77697-4|AAA27900.4| 493|Caenorhabditis elegans Hypothetical pr... 36 0.023
Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical pr... 33 0.16
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 33 0.16
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 33 0.16
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 33 0.16
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 33 0.16
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 33 0.16
AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen prot... 33 0.29
U00025-2|ABA54414.1| 418|Caenorhabditis elegans Amp-activated k... 31 0.66
U00025-1|ABA54413.1| 589|Caenorhabditis elegans Amp-activated k... 31 0.66
AY347272-1|AAR06927.1| 589|Caenorhabditis elegans AMP-activated... 31 0.66
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 31 0.66
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 31 0.87
Z78415-7|CAH60759.1| 844|Caenorhabditis elegans Hypothetical pr... 31 0.87
Z78415-5|CAB01670.1| 925|Caenorhabditis elegans Hypothetical pr... 31 0.87
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 31 0.87
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 31 1.2
Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical pr... 30 1.5
U40187-2|AAA81159.1| 282|Caenorhabditis elegans Collagen protei... 30 1.5
M25479-1|AAA27993.1| 282|Caenorhabditis elegans collagen protein. 30 1.5
Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z49967-4|CAA90250.1| 287|Caenorhabditis elegans Hypothetical pr... 30 2.0
U49795-1|AAB03859.1| 673|Caenorhabditis elegans DNA-binding pro... 30 2.0
U49794-1|AAB03858.1| 673|Caenorhabditis elegans lag-1 protein. 30 2.0
DQ812088-1|ABG89384.1| 530|Caenorhabditis elegans mammalian str... 30 2.0
AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen stru... 30 2.0
AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen stru... 30 2.0
AF100663-8|AAM98006.1| 671|Caenorhabditis elegans Lin-12 and gl... 30 2.0
AF100663-7|AAC68978.3| 673|Caenorhabditis elegans Lin-12 and gl... 30 2.0
AC093703-2|AAL77187.3| 473|Caenorhabditis elegans Hypothetical ... 30 2.0
AC024823-2|AAF59596.3| 530|Caenorhabditis elegans Hypothetical ... 30 2.0
Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z70208-1|CAA94141.1| 339|Caenorhabditis elegans Hypothetical pr... 29 3.5
AF039720-3|AAB96697.1| 281|Caenorhabditis elegans Collagen prot... 29 3.5
Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z66499-3|CAA91300.1| 348|Caenorhabditis elegans Hypothetical pr... 29 4.7
U80444-2|AAB37788.1| 305|Caenorhabditis elegans Collagen protei... 29 4.7
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 29 4.7
M34451-1|AAA28143.1| 348|Caenorhabditis elegans protein ( C.ele... 29 4.7
L23651-12|AAA27958.1| 305|Caenorhabditis elegans Collagen prote... 29 4.7
AL032627-21|CAD66221.1| 289|Caenorhabditis elegans Hypothetical... 29 4.7
AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen prot... 29 4.7
AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen prot... 29 4.7
Z81548-4|CAB04465.1| 916|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z81503-5|CAB04114.1| 916|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z68338-5|CAA92758.1| 203|Caenorhabditis elegans Hypothetical pr... 28 6.2
U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical pr... 28 6.2
U78953-1|AAB38323.1| 185|Caenorhabditis elegans basic helix-loo... 28 6.2
L15347-1|AAA28142.1| 813|Caenorhabditis elegans raf proto-oncog... 28 6.2
AY493414-1|AAR86713.1| 769|Caenorhabditis elegans LIN-45 isofor... 28 6.2
AY493413-1|AAR86712.1| 813|Caenorhabditis elegans LIN-45 isofor... 28 6.2
AY455928-1|AAR26307.1| 813|Caenorhabditis elegans LIN-45 protein. 28 6.2
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 28 6.2
AC024204-7|AAM97982.1| 614|Caenorhabditis elegans Abnormal cell... 28 6.2
AC024204-6|AAF36042.1| 813|Caenorhabditis elegans Abnormal cell... 28 6.2
Z81540-9|CAD89742.1| 740|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z54237-4|CAN86899.1| 297|Caenorhabditis elegans Hypothetical pr... 28 8.1
X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein. 28 8.1
U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter... 28 8.1
U41011-8|AAA82291.2| 321|Caenorhabditis elegans Collagen protei... 28 8.1
AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen pro... 28 8.1
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen... 28 8.1
AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen prot... 28 8.1
>M77697-4|AAA27900.4| 493|Caenorhabditis elegans Hypothetical
protein B0303.7 protein.
Length = 493
Score = 36.3 bits (80), Expect = 0.023
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +3
Query: 318 HRGASSPGNMSGAHSDINSP-ENSMPGSPLGPKSPSTPKSSDVGSNPGSPTFTQQYSPVP 494
HRG +SPG +SG+HS I S EN G + + ST S ++ S + + +P P
Sbjct: 116 HRGGTSPGKLSGSHSAIRSQLENMHIGGSVMSSNSSTATPSYQSNSTSSYSSSAPVAPPP 175
>Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.4 protein.
Length = 290
Score = 33.5 bits (73), Expect = 0.16
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = +3
Query: 324 GASSPGNMSGAHSDINSPENSMPGSPLGPKSPSTPKSSDVGSNPGSPTFTQQYSPVP 494
G PG GA + P + PG+P GP + TP + N G+P Y P P
Sbjct: 215 GPGQPGQSGGAGAP--GPAGA-PGAPGGPGNAGTPGTPGAPGNAGAPGGDAAYCPCP 268
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 33.5 bits (73), Expect = 0.16
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +3
Query: 306 TSNQHRGASSPGNMSGAHSDINSPENSMPGSPLGPKSPSTPKSSDVGSNPGS 461
+S Q SSPG MS S +PGS P S+P S ++ GS
Sbjct: 288 SSTQSASPSSPGTMSTVSGPTGSTVTVVPGSSTSPAPSSSPNPSSSPASTGS 339
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 33.5 bits (73), Expect = 0.16
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +3
Query: 306 TSNQHRGASSPGNMSGAHSDINSPENSMPGSPLGPKSPSTPKSSDVGSNPGS 461
+S Q SSPG MS S +PGS P S+P S ++ GS
Sbjct: 495 SSTQSASPSSPGTMSTVSGPTGSTVTVVPGSSTSPAPSSSPNPSSSPASTGS 546
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 33.5 bits (73), Expect = 0.16
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +3
Query: 306 TSNQHRGASSPGNMSGAHSDINSPENSMPGSPLGPKSPSTPKSSDVGSNPGS 461
+S Q SSPG MS S +PGS P S+P S ++ GS
Sbjct: 495 SSTQSASPSSPGTMSTVSGPTGSTVTVVPGSSTSPAPSSSPNPSSSPASTGS 546
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +3
Query: 309 SNQHRGASSPGNMSGAHSDINSPENSMPGSP---LGPKSPSTPKSSDVGSNPGS 461
S+ G+S+ N S + S S S PGS L SPS +SS +GS+ GS
Sbjct: 1084 SSTSGGSSTSPNPSQSTSPSTSGATSSPGSSGTTLTSISPSPSQSSTIGSSQGS 1137
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +3
Query: 336 PGNMSGAHSDINSPENSMPGSPLGPKSPSTPKSSDVGSNPGS 461
P + +P PG+ L SPS +S+ +GS GS
Sbjct: 872 PSQSTSPVESSTTPSPGSPGTTLTSTSPSPSQSTTIGSTQGS 913
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 33.5 bits (73), Expect = 0.16
Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Frame = +3
Query: 324 GASSPGNMSGAHSDINSP--ENSMPGSPLGPKSPSTPKSSDVGS---NPGSPTFTQ---Q 479
G S GN G S N + PG PLG SP TP + +P SP F+
Sbjct: 1529 GFSPAGNTDGGASPFNEGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQFSMTSPH 1588
Query: 480 YSPVPNS 500
YSP S
Sbjct: 1589 YSPTSPS 1595
Score = 31.9 bits (69), Expect = 0.50
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = +3
Query: 333 SPGNMSGAHSDINSPENSMPGSPLGPKSPS-TPKSSDVGSNPGSPTF---TQQYSPVPNS 500
S G MS +SP+ SM P SPS +P S G +P SP++ + YSP S
Sbjct: 1566 SYGGMSPGVYSPSSPQFSMTSPHYSPTSPSYSPTSPAAGQSPVSPSYSPTSPSYSPTSPS 1625
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 33.5 bits (73), Expect = 0.16
Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Frame = +3
Query: 324 GASSPGNMSGAHSDINSP--ENSMPGSPLGPKSPSTPKSSDVGS---NPGSPTFTQ---Q 479
G S GN G S N + PG PLG SP TP + +P SP F+
Sbjct: 1536 GFSPAGNTDGGASPFNEGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQFSMTSPH 1595
Query: 480 YSPVPNS 500
YSP S
Sbjct: 1596 YSPTSPS 1602
Score = 31.9 bits (69), Expect = 0.50
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = +3
Query: 333 SPGNMSGAHSDINSPENSMPGSPLGPKSPS-TPKSSDVGSNPGSPTF---TQQYSPVPNS 500
S G MS +SP+ SM P SPS +P S G +P SP++ + YSP S
Sbjct: 1573 SYGGMSPGVYSPSSPQFSMTSPHYSPTSPSYSPTSPAAGQSPVSPSYSPTSPSYSPTSPS 1632
>AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen protein
68 protein.
Length = 329
Score = 32.7 bits (71), Expect = 0.29
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +3
Query: 324 GASSPGNMSGAHSDINSPE-NSMPGSPLGPKSPSTPKSSD-VGSNPGSPTFTQQYSPVPN 497
G P +G +P N++PG P GP P P +D + NPG+P Q VP
Sbjct: 195 GKQGPKGPNGEPGAPGTPGGNALPGPP-GPPGPQGPPGADGLPGNPGAPGVPGQVIEVPG 253
Query: 498 S 500
+
Sbjct: 254 T 254
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = +3
Query: 324 GASSPGNMSGAHSDINSPENSMPGSPLGPKSPSTPKSSDVGSNPGSP 464
G P G +P +S PG P GP P P NPGSP
Sbjct: 259 GPPGPPGPIGPPGQPGAPGSSQPG-PQGP--PGDPGIDGAPGNPGSP 302
>U00025-2|ABA54414.1| 418|Caenorhabditis elegans Amp-activated
kinase protein 1,isoform b protein.
Length = 418
Score = 31.5 bits (68), Expect = 0.66
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 321 RGASSPGNMSGAHSDINSPENSMPGSPLGPKSPSTP 428
R AS ++ + SD+N + +P SPL P SP +P
Sbjct: 312 RAASVSVTLAKSKSDLNGNSSKVPMSPLSPMSPISP 347
>U00025-1|ABA54413.1| 589|Caenorhabditis elegans Amp-activated
kinase protein 1,isoform a protein.
Length = 589
Score = 31.5 bits (68), Expect = 0.66
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 321 RGASSPGNMSGAHSDINSPENSMPGSPLGPKSPSTP 428
R AS ++ + SD+N + +P SPL P SP +P
Sbjct: 483 RAASVSVTLAKSKSDLNGNSSKVPMSPLSPMSPISP 518
>AY347272-1|AAR06927.1| 589|Caenorhabditis elegans AMP-activated
protein kinase alphasubunit 2 protein.
Length = 589
Score = 31.5 bits (68), Expect = 0.66
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 321 RGASSPGNMSGAHSDINSPENSMPGSPLGPKSPSTP 428
R AS ++ + SD+N + +P SPL P SP +P
Sbjct: 483 RAASVSVTLAKSKSDLNGNSSKVPMSPLSPMSPISP 518
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 31.5 bits (68), Expect = 0.66
Identities = 22/62 (35%), Positives = 23/62 (37%)
Frame = +3
Query: 312 NQHRGASSPGNMSGAHSDINSPENSMPGSPLGPKSPSTPKSSDVGSNPGSPTFTQQYSPV 491
N G S P N G S N P + SP GP P P S N SP P
Sbjct: 966 NGPNGPSDP-NKPGP-SGPNGPSDPNKPSPNGPSDPVKPSPSGPSPNGPSPNGPSPNGPS 1023
Query: 492 PN 497
PN
Sbjct: 1024 PN 1025
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +3
Query: 333 SPGNMSGAHSDINSPENSMPGSPLGPKSPSTPKSSDVGSNPGSPTFTQQYSP 488
S N G + S + + PG P GP +PS P+SS G P+ + +P
Sbjct: 1359 SDPNKPGPNGPNGSSDPNKPG-PNGPSNPSVPESSTGGGPSPGPSPNEPSNP 1409
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 31.1 bits (67), Expect = 0.87
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 393 GSPLGPKSPSTPKSSDVGSNPGSPTFTQQYSPVP 494
G P+GP P++ G N G P QQY P P
Sbjct: 241 GPPMGPPM-GHPQAPQYGQNYGQPVAPQQYKPPP 273
>Z78415-7|CAH60759.1| 844|Caenorhabditis elegans Hypothetical
protein C17G1.4b protein.
Length = 844
Score = 31.1 bits (67), Expect = 0.87
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +3
Query: 312 NQHRGASSPGNMSGAHSDINSPENSMPGSPLGPKSPSTPKS-SDVGSNPGSPTFTQQYSP 488
N G P G + N+P S +P P +P TP S VGSN +P Q+ S
Sbjct: 336 NDLSGVPGPSGGYGQMNSSNTPNQSERSTPGQPSTPGTPGSHGTVGSN--APLSHQKPSQ 393
Query: 489 VPNSMN 506
SM+
Sbjct: 394 QQQSMH 399
>Z78415-5|CAB01670.1| 925|Caenorhabditis elegans Hypothetical
protein C17G1.4a protein.
Length = 925
Score = 31.1 bits (67), Expect = 0.87
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +3
Query: 312 NQHRGASSPGNMSGAHSDINSPENSMPGSPLGPKSPSTPKS-SDVGSNPGSPTFTQQYSP 488
N G P G + N+P S +P P +P TP S VGSN +P Q+ S
Sbjct: 336 NDLSGVPGPSGGYGQMNSSNTPNQSERSTPGQPSTPGTPGSHGTVGSN--APLSHQKPSQ 393
Query: 489 VPNSMN 506
SM+
Sbjct: 394 QQQSMH 399
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 31.1 bits (67), Expect = 0.87
Identities = 28/84 (33%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
Frame = -3
Query: 463 GDPGLEPTSLDLGVLGDLGPKGDPGIE-FSGEL-ISE*APLMFPGELAPRC*LDVGCKGD 290
G PG D G G+ GP G+PG GE E P PG P G GD
Sbjct: 180 GPPGPPGPDGDSGPNGEAGPNGEPGAPGKDGEKGKGEPGPAGPPGPPGPG-----GPPGD 234
Query: 289 CD*LSGEGECGPHEPPDRGE*GGN 218
+G GP PP + GN
Sbjct: 235 AGGAGSDGAPGPQGPPGQDGTPGN 258
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Frame = +3
Query: 375 PENSMPGSPLGPKSPST----PKSSDVGSNPGSP---TFTQQYSPVPNSMN 506
P S P +P P PST P SS V S+P +P T T +P P ++N
Sbjct: 1620 PPASSPSAPSIPSIPSTLPVAPSSSSVPSSPSAPSESTSTVSETPAPVNVN 1670
>Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.6 protein.
Length = 290
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/57 (31%), Positives = 22/57 (38%)
Frame = +3
Query: 324 GASSPGNMSGAHSDINSPENSMPGSPLGPKSPSTPKSSDVGSNPGSPTFTQQYSPVP 494
G PG GA + P + PG+P GP P N G+P Y P P
Sbjct: 215 GPGQPGQSGGAGAP--GPAGA-PGAPGGPGQPGQDGQPGAPGNDGAPGGDAAYCPCP 268
>U40187-2|AAA81159.1| 282|Caenorhabditis elegans Collagen protein 8
protein.
Length = 282
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/59 (33%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Frame = +3
Query: 321 RGASSP-GNMSGAHSDINSPENSMPGSPLGPKSPSTPKSSDVGSNPGSPTFTQQYSPVP 494
RG P GN GA D N PG P P P + PG P Y P P
Sbjct: 218 RGPPGPEGNPGGAGEDGNQGPVGHPGVPGRPGIPGKSGTCGEHGGPGEPGPDAGYCPCP 276
>M25479-1|AAA27993.1| 282|Caenorhabditis elegans collagen protein.
Length = 282
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/59 (33%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Frame = +3
Query: 321 RGASSP-GNMSGAHSDINSPENSMPGSPLGPKSPSTPKSSDVGSNPGSPTFTQQYSPVP 494
RG P GN GA D N PG P P P + PG P Y P P
Sbjct: 218 RGPPGPEGNPGGAGEDGNQGPVGHPGVPGRPGIPGKSGTCGEHGGPGEPGPDAGYCPCP 276
>Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.6 protein.
Length = 299
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 324 GASSPGNMSGAHSDINSPENS-MPGSPLGPKSPSTPKSSDVGSNPGSP 464
G + P +GA+ + +P N PG+P G K PS P NPG+P
Sbjct: 157 GPAGPAGDAGANGNPGAPGNDGQPGAP-GNKGPSGPNG-----NPGAP 198
>Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.4 protein.
Length = 299
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 324 GASSPGNMSGAHSDINSPENS-MPGSPLGPKSPSTPKSSDVGSNPGSP 464
G + P +GA+ + +P N PG+P G K PS P NPG+P
Sbjct: 157 GPAGPAGDAGANGNPGAPGNDGQPGAP-GNKGPSGPNG-----NPGAP 198
>Z49967-4|CAA90250.1| 287|Caenorhabditis elegans Hypothetical
protein F54C9.4 protein.
Length = 287
Score = 29.9 bits (64), Expect = 2.0
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 9/82 (10%)
Frame = -3
Query: 595 SGDAGRDLVSGE--------PVGDFVDPLGLCGVFGPSFILLGTGLY-C*VNVGDPGLEP 443
SGD GRD SG P G P G G GP + G + G G +
Sbjct: 117 SGDKGRDGASGVSLAVTHHLPGGCIQCPQGPPGETGPDGDIGEPGFPGASGSAGQCGEDG 176
Query: 442 TSLDLGVLGDLGPKGDPGIEFS 377
+ G+ G+ GP+G+PG E S
Sbjct: 177 APGEAGITGEQGPQGEPGTEGS 198
>U49795-1|AAB03859.1| 673|Caenorhabditis elegans DNA-binding
protein LAG-1 protein.
Length = 673
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = +3
Query: 306 TSNQHRGASSPGNMSGAHSDINSPENSMPGSPLGPKSPSTPKSSDVGSNPGSPTFTQQYS 485
TS+ AS+ +G NSP NS P +G +P+T D ++ T +
Sbjct: 112 TSSHSDVASTSKGTNGQDQSKNSPTNSDPFYTIGQSTPNTSSFLDTSNSSFGAPSTVVAN 171
Query: 486 PVPN 497
P+ N
Sbjct: 172 PMTN 175
>U49794-1|AAB03858.1| 673|Caenorhabditis elegans lag-1 protein.
Length = 673
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = +3
Query: 306 TSNQHRGASSPGNMSGAHSDINSPENSMPGSPLGPKSPSTPKSSDVGSNPGSPTFTQQYS 485
TS+ AS+ +G NSP NS P +G +P+T D ++ T +
Sbjct: 112 TSSHSDVASTSKGTNGQDQSKNSPTNSDPFYTIGQSTPNTSSFLDTSNSSFGAPSTVVAN 171
Query: 486 PVPN 497
P+ N
Sbjct: 172 PMTN 175
>DQ812088-1|ABG89384.1| 530|Caenorhabditis elegans mammalian
stromal interaction molecule-1 protein.
Length = 530
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +3
Query: 309 SNQHRGASSPGNMSGAHSDINSPENSM--PGSPLGPKSPSTPKSSDVGSNPGSPTFTQQY 482
+ H G+SS G++S AHS+ N+ ++ SP P S T V + ++
Sbjct: 406 NKSHEGSSSSGSISNAHSNPNAVNSNFVKKVSPPIPPSQQTANLRFVPTEQSDSIHSEDT 465
Query: 483 SPV 491
SP+
Sbjct: 466 SPI 468
>AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-3) protein.
Length = 299
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 324 GASSPGNMSGAHSDINSPENS-MPGSPLGPKSPSTPKSSDVGSNPGSP 464
G + P +GA+ + +P N PG+P G K PS P NPG+P
Sbjct: 157 GPAGPAGDAGANGNPGAPGNDGQPGAP-GNKGPSGPNG-----NPGAP 198
>AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-117) protein.
Length = 299
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 324 GASSPGNMSGAHSDINSPENS-MPGSPLGPKSPSTPKSSDVGSNPGSP 464
G + P +GA+ + +P N PG+P G K PS P NPG+P
Sbjct: 157 GPAGPAGDAGANGNPGAPGNDGQPGAP-GNKGPSGPNG-----NPGAP 198
>AF100663-8|AAM98006.1| 671|Caenorhabditis elegans Lin-12 and glp-1
phenotype protein1, isoform b protein.
Length = 671
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = +3
Query: 306 TSNQHRGASSPGNMSGAHSDINSPENSMPGSPLGPKSPSTPKSSDVGSNPGSPTFTQQYS 485
TS+ AS+ +G NSP NS P +G +P+T D ++ T +
Sbjct: 110 TSSHSDVASTSKGTNGQDQSKNSPTNSDPFYTIGQSTPNTSSFLDTSNSSFGAPSTVVAN 169
Query: 486 PVPN 497
P+ N
Sbjct: 170 PMTN 173
>AF100663-7|AAC68978.3| 673|Caenorhabditis elegans Lin-12 and glp-1
phenotype protein1, isoform a protein.
Length = 673
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = +3
Query: 306 TSNQHRGASSPGNMSGAHSDINSPENSMPGSPLGPKSPSTPKSSDVGSNPGSPTFTQQYS 485
TS+ AS+ +G NSP NS P +G +P+T D ++ T +
Sbjct: 112 TSSHSDVASTSKGTNGQDQSKNSPTNSDPFYTIGQSTPNTSSFLDTSNSSFGAPSTVVAN 171
Query: 486 PVPN 497
P+ N
Sbjct: 172 PMTN 175
>AC093703-2|AAL77187.3| 473|Caenorhabditis elegans Hypothetical
protein Y20F4.2 protein.
Length = 473
Score = 29.9 bits (64), Expect = 2.0
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = +3
Query: 309 SNQHRGASSPGNMSGAH--SDINSPENSMPGSPLGPKSPSTPKSSDVGSNPGSPTFTQQY 482
+NQ G + G MS H S ++SP +S S L TP S PG F Q
Sbjct: 260 NNQQMGGGNNG-MSPYHNGSPLHSPMDSPHASTLMLDGSGTPSPYMEVSPPGMHDFNQDA 318
Query: 483 SPVPNSMN 506
+PN N
Sbjct: 319 GSLPNLQN 326
>AC024823-2|AAF59596.3| 530|Caenorhabditis elegans Hypothetical
protein Y55B1BM.1a protein.
Length = 530
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +3
Query: 309 SNQHRGASSPGNMSGAHSDINSPENSM--PGSPLGPKSPSTPKSSDVGSNPGSPTFTQQY 482
+ H G+SS G++S AHS+ N+ ++ SP P S T V + ++
Sbjct: 406 NKSHEGSSSSGSISNAHSNPNAVNSNFVKKVSPPIPPSQQTANLRFVPTEQSDSIHSEDT 465
Query: 483 SPV 491
SP+
Sbjct: 466 SPI 468
>Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical
protein C29F4.1 protein.
Length = 299
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 324 GASSPGNMSGAHSDINSP-ENSMPGSPLGPKSPSTPKSSDVGSNPGSP 464
G + P +GA+ + +P ++ PG+P G K PS P NPG+P
Sbjct: 157 GPAGPAGDAGANGNPGAPGQDGQPGAP-GNKGPSGPNG-----NPGAP 198
>Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical
protein T21B4.2 protein.
Length = 312
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/56 (28%), Positives = 21/56 (37%)
Frame = +3
Query: 327 ASSPGNMSGAHSDINSPENSMPGSPLGPKSPSTPKSSDVGSNPGSPTFTQQYSPVP 494
A PG G + N+P G P P P P + PG+P + VP
Sbjct: 180 AGPPGAPGGPGAPGNTPSGGAAGPPGPPGPPGGPGNDGQPGGPGNPGAPGAVTEVP 235
>Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical
protein C15A11.1 protein.
Length = 303
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Frame = +3
Query: 324 GASSPGNMSGAH--SDINSPENSMPGSPLGPKSPSTPKSSDVGSNPGSP 464
GA P GA + N P + P P GP P+ ++ S PG P
Sbjct: 163 GAPGPNGQPGAAGTTSTNEPGSPGPAGPPGPAGPAGEDAAAPESPPGPP 211
>Z70208-1|CAA94141.1| 339|Caenorhabditis elegans Hypothetical
protein F54B11.1 protein.
Length = 339
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +3
Query: 336 PGNMSGAHSDINSPENSMPGSPLGPKSP-STPKSSDVGSNPGSP 464
PG G S N +PG PLGP P P + + PGSP
Sbjct: 202 PGLPGGMGPPGQSMSNVLPG-PLGPPGPPGQPGNHGLAGQPGSP 244
>AF039720-3|AAB96697.1| 281|Caenorhabditis elegans Collagen protein
54 protein.
Length = 281
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +3
Query: 369 NSPENSMPGSPLGPKSPSTPKSSDVGSNPG 458
N P N PG P +P TP + NPG
Sbjct: 82 NGPNNCPPGEAGPPGAPGTPGADGEAGNPG 111
>Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical
protein F57B7.3 protein.
Length = 295
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = +3
Query: 312 NQHRGASSPGNMSGAHSDINSP-ENSMPGSPLGPKSPSTPKSSDVGSNPGSP 464
N RG +PG GA +P N PG P P +S PG P
Sbjct: 197 NGRRGRGTPG-APGAPGAAGAPGNNGQPGQDGAPGQAGAPGASGPDGQPGQP 247
>Z66499-3|CAA91300.1| 348|Caenorhabditis elegans Hypothetical
protein T01B7.7 protein.
Length = 348
Score = 28.7 bits (61), Expect = 4.7
Identities = 22/68 (32%), Positives = 28/68 (41%)
Frame = -3
Query: 592 GDAGRDLVSGEPVGDFVDPLGLCGVFGPSFILLGTGLYC*VNVGDPGLEPTSLDLGVLGD 413
G D+ + P G F P G G GP+ G+ G PG + G+ GD
Sbjct: 176 GKDAEDVQNTPPTGCFTCPQGPLGPQGPNGAPGLRGMRG--ARGQPGRPGRDGNPGMPGD 233
Query: 412 LGPKGDPG 389
GP G PG
Sbjct: 234 CGPPGAPG 241
>U80444-2|AAB37788.1| 305|Caenorhabditis elegans Collagen protein
58 protein.
Length = 305
Score = 28.7 bits (61), Expect = 4.7
Identities = 26/90 (28%), Positives = 34/90 (37%)
Frame = -3
Query: 592 GDAGRDLVSGEPVGDFVDPLGLCGVFGPSFILLGTGLYC*VNVGDPGLEPTSLDLGVLGD 413
GD G D G P + V + G GP +G+ G PGL D G G
Sbjct: 209 GDPGFDGKPGNPGNNGVRVRRIPGPPGPRGAEGDSGVQG--GPGSPGLAGAPGDSGAPGP 266
Query: 412 LGPKGDPGIEFSGELISE*APLMFPGELAP 323
GP G G++ + + P GE P
Sbjct: 267 QGPPGQKGMDGTPGGFGQPGPQGVDGEYCP 296
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 28.7 bits (61), Expect = 4.7
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = -3
Query: 463 GDPGLEPTSLDLGVLGDLGPKGDPGIEFSGELISE*APLMFPGE---LAPRC*LDVGCKG 293
G PG + + G+ G +GPKGDPG S P F G + PR + G KG
Sbjct: 206 GPPGEAGSPGNPGI-GSIGPKGDPGDLGSVGPPGPPGPREFTGSGSIVGPRG--NPGEKG 262
Query: 292 DCD*LSGEGECGPHEP 245
D + G GP P
Sbjct: 263 DKGDIGAMGPAGPPGP 278
>M34451-1|AAA28143.1| 348|Caenorhabditis elegans protein (
C.elegans collagen (rol-6) gene, complete cds. ).
Length = 348
Score = 28.7 bits (61), Expect = 4.7
Identities = 22/68 (32%), Positives = 28/68 (41%)
Frame = -3
Query: 592 GDAGRDLVSGEPVGDFVDPLGLCGVFGPSFILLGTGLYC*VNVGDPGLEPTSLDLGVLGD 413
G D+ + P G F P G G GP+ G+ G PG + G+ GD
Sbjct: 176 GKDAEDVQNTPPTGCFTCPQGPLGPQGPNGAPGLRGMRG--ARGQPGRPGRDGNPGMPGD 233
Query: 412 LGPKGDPG 389
GP G PG
Sbjct: 234 CGPPGAPG 241
>L23651-12|AAA27958.1| 305|Caenorhabditis elegans Collagen protein
90 protein.
Length = 305
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -3
Query: 463 GDPGLEPTSLDLGVLGDLGPKGDPGIEFS 377
G PGL D GV+GDLG G GI +
Sbjct: 99 GPPGLPGKRGDEGVVGDLGRSGASGISLA 127
>AL032627-21|CAD66221.1| 289|Caenorhabditis elegans Hypothetical
protein Y41C4A.19 protein.
Length = 289
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = +3
Query: 330 SSPGNMSGAHSDINSPENSMPGSPLGPKSPSTPKSSDVGSNPGSP 464
S+PG A + PG+P GP P P S PG P
Sbjct: 201 STPGAPGQAGPQGPPGSSGAPGAPGGPGFPGAPGSKGPSGAPGQP 245
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = +3
Query: 321 RGASSPGNMSGAHSD--INSPENSMPGSP--LGPKSPSTPKSSDVGSNPGSPTF 470
RGA +GA +++ S PG+P GP+ P P SS PG P F
Sbjct: 178 RGAPGHPGQAGAPGQPGVDAQSQSTPGAPGQAGPQGP--PGSSGAPGAPGGPGF 229
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = +3
Query: 324 GASSPGNMSGAHSDINSPENSMPGSPLGPKSPS-TPKSSDVGSNPGSP 464
G P SGA P PG+P G K PS P NPG+P
Sbjct: 210 GPQGPPGSSGAPGAPGGP--GFPGAP-GSKGPSGAPGQPGANGNPGAP 254
>AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen protein
141 protein.
Length = 314
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/57 (31%), Positives = 21/57 (36%)
Frame = +3
Query: 324 GASSPGNMSGAHSDINSPENSMPGSPLGPKSPSTPKSSDVGSNPGSPTFTQQYSPVP 494
G PG SG P PG+P P TP + N G+P Y P P
Sbjct: 225 GPGQPGQ-SGGSGTPGQP--GAPGAPGHPGQAGTPGTPGAPGNSGAPGGDAAYCPCP 278
>AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen protein
108 protein.
Length = 304
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Frame = +3
Query: 324 GASSPGNMSGAHSDINSP----ENSMPGSPLGPKSPS-TPKSSDVGSNPGSP 464
GA P G +P + PG+P GPK P+ P + NPG+P
Sbjct: 221 GAPGPAGPPGPQGPPGAPGQPGHDGQPGTP-GPKGPNGNPGAPGADGNPGTP 271
>Z81548-4|CAB04465.1| 916|Caenorhabditis elegans Hypothetical
protein F14F7.5 protein.
Length = 916
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Frame = +3
Query: 333 SPGNMSGAHSDINSPENSMPGSPLGPKSPSTPKSS----DVGSNPGSPT 467
+P N S P S P +P P +P T +S D+ +P PT
Sbjct: 790 APSNQSPPSQPQPGPRGSSPPAPSAPSAPETDTNSLALVDLTDSPADPT 838
>Z81503-5|CAB04114.1| 916|Caenorhabditis elegans Hypothetical
protein F14F7.5 protein.
Length = 916
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Frame = +3
Query: 333 SPGNMSGAHSDINSPENSMPGSPLGPKSPSTPKSS----DVGSNPGSPT 467
+P N S P S P +P P +P T +S D+ +P PT
Sbjct: 790 APSNQSPPSQPQPGPRGSSPPAPSAPSAPETDTNSLALVDLTDSPADPT 838
>Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical
protein F55C10.3 protein.
Length = 266
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 324 GASSPGNMSGAHSDINSP-ENSMPGSPLGPKSPSTPKSSDVGSNPGSP 464
G P +G + + SP ++ PG+P G K PS P NPG+P
Sbjct: 124 GPPGPSGDAGGNGNPGSPGQDGQPGAP-GNKGPSGPNG-----NPGAP 165
>Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical
protein F55C10.2 protein.
Length = 299
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 324 GASSPGNMSGAHSDINSP-ENSMPGSPLGPKSPSTPKSSDVGSNPGSP 464
G P +G + + SP ++ PG+P G K PS P NPG+P
Sbjct: 157 GPPGPSGDAGGNGNPGSPGQDGQPGAP-GNKGPSGPNG-----NPGAP 198
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +3
Query: 339 GNMSGAHSDINSPENSMPGS-PLGPKSP-STPKSSDVGSNPGSPTFTQQYSPVPNS 500
G MS S ++S P S G SP STPK VGSN +++ P +
Sbjct: 523 GGMSPISSSVSSASAPSPSSLSAGSVSPDSTPKKRIVGSNANFEKAKEKWGAAPKA 578
>Z68338-5|CAA92758.1| 203|Caenorhabditis elegans Hypothetical
protein T24B8.6 protein.
Length = 203
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +3
Query: 381 NSMPGS-PLGPKSPSTPKS--SDVGSNPGSPTFTQQYSPVPNSMN 506
NSMP P +SP P+S S + P SP++T Y P P M+
Sbjct: 125 NSMPADFPTPEQSPVYPQSVCSMMAQTP-SPSYTSPYYPPPQMMS 168
>U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical
protein T23H2.3 protein.
Length = 1009
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 369 NSPENSMPGSPLGPKSPSTPKSS 437
NSP+ PGSP PS PK++
Sbjct: 207 NSPQTPYPGSPEASPQPSPPKNT 229
>U78953-1|AAB38323.1| 185|Caenorhabditis elegans basic
helix-loop-helix DNA bindingprotein HLH-3 protein.
Length = 185
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +3
Query: 381 NSMPGS-PLGPKSPSTPKS--SDVGSNPGSPTFTQQYSPVPNSMN 506
NSMP P +SP P+S S + P SP++T Y P P M+
Sbjct: 92 NSMPADFPTPEQSPVYPQSVCSMMAQTP-SPSYTSPYYPPPQMMS 135
>L15347-1|AAA28142.1| 813|Caenorhabditis elegans raf proto-oncogene
protein.
Length = 813
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 306 TSNQHRGASSPGN-MSGAHSDINSPENSMPGSPLGPKSPSTPKSSDVGSNPGSPTFTQ 476
T +HR G+ +SGA +N + +PLG SPS+ SS G G PT Q
Sbjct: 354 TQARHRPHFQSGHILSGAR--MNRLHPLVDCTPLGSNSPSSTCSSPPGGLIGQPTLGQ 409
>AY493414-1|AAR86713.1| 769|Caenorhabditis elegans LIN-45 isoform 3
protein.
Length = 769
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 306 TSNQHRGASSPGN-MSGAHSDINSPENSMPGSPLGPKSPSTPKSSDVGSNPGSPTFTQ 476
T +HR G+ +SGA +N + +PLG SPS+ SS G G PT Q
Sbjct: 310 TQARHRPHFQSGHILSGAR--MNRLHPLVDCTPLGSNSPSSTCSSPPGGLIGQPTLGQ 365
>AY493413-1|AAR86712.1| 813|Caenorhabditis elegans LIN-45 isoform 2
protein.
Length = 813
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 306 TSNQHRGASSPGN-MSGAHSDINSPENSMPGSPLGPKSPSTPKSSDVGSNPGSPTFTQ 476
T +HR G+ +SGA +N + +PLG SPS+ SS G G PT Q
Sbjct: 354 TQARHRPHFQSGHILSGAR--MNRLHPLVDCTPLGSNSPSSTCSSPPGGLIGQPTLGQ 409
>AY455928-1|AAR26307.1| 813|Caenorhabditis elegans LIN-45 protein.
Length = 813
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 306 TSNQHRGASSPGN-MSGAHSDINSPENSMPGSPLGPKSPSTPKSSDVGSNPGSPTFTQ 476
T +HR G+ +SGA +N + +PLG SPS+ SS G G PT Q
Sbjct: 354 TQARHRPHFQSGHILSGAR--MNRLHPLVDCTPLGSNSPSSTCSSPPGGLIGQPTLGQ 409
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Frame = +3
Query: 324 GASSPGNMSGAH--SDINSPENSMPGSPLGPKSPSTPKSSDVGSNPGSP 464
GA GA + +NSP P P GP P S + PG P
Sbjct: 229 GAPGQDGQPGAPGTNTVNSPGGPGPAGPPGPPGPPGQDGSGGAAQPGPP 277
>AC024204-7|AAM97982.1| 614|Caenorhabditis elegans Abnormal cell
lineage protein 45,isoform b protein.
Length = 614
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 306 TSNQHRGASSPGN-MSGAHSDINSPENSMPGSPLGPKSPSTPKSSDVGSNPGSPTFTQ 476
T +HR G+ +SGA +N + +PLG SPS+ SS G G PT Q
Sbjct: 396 TQARHRPHFQSGHILSGAR--MNRLHPLVDCTPLGSNSPSSTCSSPPGGLIGQPTLGQ 451
>AC024204-6|AAF36042.1| 813|Caenorhabditis elegans Abnormal cell
lineage protein 45,isoform a protein.
Length = 813
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 306 TSNQHRGASSPGN-MSGAHSDINSPENSMPGSPLGPKSPSTPKSSDVGSNPGSPTFTQ 476
T +HR G+ +SGA +N + +PLG SPS+ SS G G PT Q
Sbjct: 354 TQARHRPHFQSGHILSGAR--MNRLHPLVDCTPLGSNSPSSTCSSPPGGLIGQPTLGQ 409
>Z81540-9|CAD89742.1| 740|Caenorhabditis elegans Hypothetical
protein F46B3.17 protein.
Length = 740
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/65 (30%), Positives = 21/65 (32%), Gaps = 1/65 (1%)
Frame = +3
Query: 306 TSNQHRGASSPGNMSGAHSDINSPENSMPGSPLGPKS-PSTPKSSDVGSNPGSPTFTQQY 482
T QH + G G EN P P GP TP S N G P F
Sbjct: 184 TPQQHPTLMNSGERLGPLPICPLDENRCPMGPPGPPGLRGTPGQSGTDGNDGLPGFDAMD 243
Query: 483 SPVPN 497
PN
Sbjct: 244 EITPN 248
>Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical
protein T11F9.9 protein.
Length = 299
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/32 (50%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = +3
Query: 375 PENSMPGSPLGPKSPSTPKSSDVGS--NPGSP 464
P P P GP P P S D GS NPGSP
Sbjct: 144 PCQPCPQGPPGPPGPPGP-SGDAGSNGNPGSP 174
>Z54237-4|CAN86899.1| 297|Caenorhabditis elegans Hypothetical
protein T11B7.3a protein.
Length = 297
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +3
Query: 363 DINSPENSMPGSPLGPK-SPSTPKSSDVGSNPGSPTFTQQYSPVP 494
D + +PG P GP+ +P P + V PG P QY P P
Sbjct: 237 DGENGSEGIPGVP-GPRGAPGQPGTIGVPGGPGIPGRDGQYCPCP 280
>X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein.
Length = 318
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 463 GDPGLEPTSLDLGVLGDLGPKGDPG 389
G PGL G +GD GP+G+PG
Sbjct: 168 GHPGLPGRPGKPGRVGDAGPQGEPG 192
>U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 7 protein.
Length = 318
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 463 GDPGLEPTSLDLGVLGDLGPKGDPG 389
G PGL G +GD GP+G+PG
Sbjct: 168 GHPGLPGRPGKPGRVGDAGPQGEPG 192
>U41011-8|AAA82291.2| 321|Caenorhabditis elegans Collagen protein
114 protein.
Length = 321
Score = 27.9 bits (59), Expect = 8.1
Identities = 24/77 (31%), Positives = 28/77 (36%)
Frame = -3
Query: 463 GDPGLEPTSLDLGVLGDLGPKGDPGIEFSGELISE*APLMFPGELAPRC*LDVGCKGDCD 284
G+PG + V GD GP GD GI P PG + G G
Sbjct: 223 GEPGKDAPQEGSPVPGDPGPPGDSGIPGPPGPPGMAGPDGIPGMGGAK-----GQNGPDG 277
Query: 283 *LSGEGECGPHEPPDRG 233
GE GP+ PP G
Sbjct: 278 PPGASGESGPNGPPGSG 294
>AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen
protein 99 protein.
Length = 627
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -3
Query: 463 GDPGLEPTSLDLGVLGDLGPKGDPGIEFSGELI-SE*APLMFPGELAP 323
G GL S + G GD+GP G PG +GE+ S+ P PG P
Sbjct: 440 GPQGLPGHSGERGDRGDIGPPGLPGQPGAGEISGSQSGPRGPPGLPGP 487
>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element on
autosome protein2 protein.
Length = 1758
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +3
Query: 312 NQHRGASSPGNMSGAHSDINSPEN--SMPGSPLGPKSPSTPKSSDV 443
+Q +PGN S +HS++ E GSPL S P S +V
Sbjct: 1064 HQQNQQQAPGNRSRSHSNVGKMEQEAQRQGSPLDSIITSVPLSIEV 1109
>AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen protein
48 protein.
Length = 285
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 463 GDPGLEPTSLDLGVLGDLGPKGDPG 389
G PG + ++ D GV G+ G +G PG
Sbjct: 229 GSPGQDGSNGDAGVAGEPGQRGPPG 253
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,869,408
Number of Sequences: 27780
Number of extensions: 258608
Number of successful extensions: 1968
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1868
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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