Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0157
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.25 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   4.0  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   7.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   7.1  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   9.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 11/48 (22%), Positives = 18/48 (37%)
 Frame = +3

Query: 312 NQHRGASSPGNMSGAHSDINSPENSMPGSPLGPKSPSTPKSSDVGSNP 455
           +Q   + +PG     H    +P+   P +P     P  P  +    NP
Sbjct: 13  SQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 529 VLVGPQSLLLVPQILDLDQHHQIHSHN 609
           VL GP S    P +++   HHQ+H+ +
Sbjct: 154 VLDGPDS----PPLVESQMHHQMHTQH 176


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +3

Query: 324 GASSPGNMSGAHSDINSPENSMPGSPLGPKSPSTPKSSDVGSNPGS 461
           G    G  + + + I S   S PG      SPS+P S     +P S
Sbjct: 62  GGVELGWFNDSAAAITSTSPSYPGGGSSSPSPSSPSSFFSSVSPTS 107


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 384 SMPGSPLGPKSPSTPKSSDVGSNPGS 461
           S PGS   P SP+    SDV S+  S
Sbjct: 234 STPGSGSLPASPADSGVSDVESSTSS 259


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -3

Query: 451 LEPTSLDLGVLGDLGPKGDPGIEFSGELISE 359
           ++PT++ L ++     K   GIE    +IS+
Sbjct: 110 IKPTAIGLSLIKGFDKKQGGGIELISHIISK 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,708
Number of Sequences: 438
Number of extensions: 2788
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)