Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0155
(671 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0) 306 8e-84
SB_28080| Best HMM Match : Glycolytic (HMM E-Value=0) 306 8e-84
SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32) 33 0.21
SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26) 33 0.21
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 33 0.21
SB_51702| Best HMM Match : SURF6 (HMM E-Value=4) 32 0.48
SB_59586| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_58036| Best HMM Match : Cadherin (HMM E-Value=0) 29 3.4
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002) 29 3.4
SB_11670| Best HMM Match : TP2 (HMM E-Value=3.5) 29 3.4
SB_6618| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0) 29 4.5
SB_36428| Best HMM Match : MutS_V (HMM E-Value=2.1e-33) 28 6.0
SB_9614| Best HMM Match : GBP (HMM E-Value=1e-31) 28 6.0
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37) 28 7.9
SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19) 28 7.9
>SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0)
Length = 949
Score = 306 bits (752), Expect = 8e-84
Identities = 152/201 (75%), Positives = 169/201 (84%), Gaps = 1/201 (0%)
Frame = +2
Query: 14 TPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSSDA 193
TPEL+ ELK+IA+AIVA KGILAADESTGTMGKRL +IGVENTEENRR YRQLLF+S
Sbjct: 6 TPELKAELKRIAEAIVADGKGILAADESTGTMGKRLANIGVENTEENRRLYRQLLFTSGK 65
Query: 194 VLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSE-DECTTQG 370
+S ISGVILFHET+YQKADDGTP V LL +GIIPGIKVDKGVV L G++ E TTQG
Sbjct: 66 EMSNAISGVILFHETVYQKADDGTPFVRLLRDQGIIPGIKVDKGVVVLAGTDAGETTTQG 125
Query: 371 LDDLAQRCAQYKKDGCHFAKWRCVLKIGRNTPSYQAIQENANVLARYASICQSQRIVPIV 550
LD L +RCAQYKKDGC FAKWRCVLKI TPS A++ENANVLARYASICQ +VPIV
Sbjct: 126 LDGLGERCAQYKKDGCDFAKWRCVLKITDYTPSELAMKENANVLARYASICQQNGLVPIV 185
Query: 551 EPEVLPDGEHDLDRAQKVTES 613
EPEVL DG+H L+RAQKVTE+
Sbjct: 186 EPEVLCDGDHTLERAQKVTEA 206
Score = 37.5 bits (83), Expect = 0.010
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = +1
Query: 613 VLAAVYKALNDHHVYLEGT 669
VL+A YKAL DHH+YLEGT
Sbjct: 207 VLSATYKALMDHHIYLEGT 225
>SB_28080| Best HMM Match : Glycolytic (HMM E-Value=0)
Length = 304
Score = 306 bits (752), Expect = 8e-84
Identities = 152/201 (75%), Positives = 169/201 (84%), Gaps = 1/201 (0%)
Frame = +2
Query: 14 TPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSSDA 193
TPEL+ ELK+IA+AIVA KGILAADESTGTMGKRL +IGVENTEENRR YRQLLF+S
Sbjct: 6 TPELKAELKRIAEAIVADGKGILAADESTGTMGKRLANIGVENTEENRRLYRQLLFTSGK 65
Query: 194 VLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSE-DECTTQG 370
+S ISGVILFHET+YQKADDGTP V LL +GIIPGIKVDKGVV L G++ E TTQG
Sbjct: 66 EMSNAISGVILFHETVYQKADDGTPFVRLLRDQGIIPGIKVDKGVVVLAGTDAGETTTQG 125
Query: 371 LDDLAQRCAQYKKDGCHFAKWRCVLKIGRNTPSYQAIQENANVLARYASICQSQRIVPIV 550
LD L +RCAQYKKDGC FAKWRCVLKI TPS A++ENANVLARYASICQ +VPIV
Sbjct: 126 LDGLGERCAQYKKDGCDFAKWRCVLKITDYTPSELAMKENANVLARYASICQQNGLVPIV 185
Query: 551 EPEVLPDGEHDLDRAQKVTES 613
EPEVL DG+H L+RAQKVTE+
Sbjct: 186 EPEVLCDGDHTLERAQKVTEA 206
Score = 37.5 bits (83), Expect = 0.010
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = +1
Query: 613 VLAAVYKALNDHHVYLEGT 669
VL+A YKAL DHH+YLEGT
Sbjct: 207 VLSATYKALMDHHIYLEGT 225
>SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32)
Length = 1074
Score = 33.1 bits (72), Expect = 0.21
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +1
Query: 259 WNPSGLPAGEEGHHPRHQGRQGCRPAVRIGRRMHHPGSGR---PRPALRPVQEGRLP 420
W P G+P G P GR G P G + G+ PRP +RP + GR+P
Sbjct: 515 WRPGGIPGRTPGRRPG--GRPGNIPPFVPGLIIPSRRPGKRPGPRPGIRPGRGGRIP 569
>SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)
Length = 687
Score = 33.1 bits (72), Expect = 0.21
Identities = 23/69 (33%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Frame = +1
Query: 232 RDPLPEG*RWNPSGLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPV 402
R P G + G P E G P GR + RP +GR H PG P P
Sbjct: 359 RPPHEPGRPPHEPGRPPHEPGRPPYEPGRPPHEPGRPPHELGRPPHEPGRPPHEPGRLPH 418
Query: 403 QEGRLPLRQ 429
+ GR P Q
Sbjct: 419 EPGRPPYEQ 427
Score = 31.9 bits (69), Expect = 0.48
Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Frame = +1
Query: 232 RDPLPEG*RWNPSGLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPV 402
R P G + G P E G P GR + RP GR H PG P P
Sbjct: 324 RPPYEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPY 383
Query: 403 QEGRLP 420
+ GR P
Sbjct: 384 EPGRPP 389
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Frame = +1
Query: 232 RDPLPEG*RWNPSGLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPV 402
R P G + G P E G P GR + RP GR H PG P P
Sbjct: 331 RPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPYEPGRPPH 390
Query: 403 QEGRLP 420
+ GR P
Sbjct: 391 EPGRPP 396
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 33.1 bits (72), Expect = 0.21
Identities = 23/69 (33%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Frame = +1
Query: 232 RDPLPEG*RWNPSGLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPV 402
R P G + G P E G P GR + RP +GR H PG P P
Sbjct: 125 RPPHEPGRPPHEPGRPPHEPGRPPYEPGRPPHEPGRPPHELGRPPHEPGRPPHEPGRLPH 184
Query: 403 QEGRLPLRQ 429
+ GR P Q
Sbjct: 185 EPGRPPYEQ 193
Score = 31.9 bits (69), Expect = 0.48
Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Frame = +1
Query: 232 RDPLPEG*RWNPSGLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPV 402
R P G + G P E G P GR + RP GR H PG P P
Sbjct: 90 RPPYEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPY 149
Query: 403 QEGRLP 420
+ GR P
Sbjct: 150 EPGRPP 155
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Frame = +1
Query: 232 RDPLPEG*RWNPSGLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPV 402
R P G + G P E G P GR + RP GR H PG P P
Sbjct: 97 RPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPYEPGRPPH 156
Query: 403 QEGRLP 420
+ GR P
Sbjct: 157 EPGRPP 162
>SB_51702| Best HMM Match : SURF6 (HMM E-Value=4)
Length = 260
Score = 31.9 bits (69), Expect = 0.48
Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 6/131 (4%)
Frame = +2
Query: 38 KKIAQAIVAPA-KGILAADESTGTMGKRLQDIGVENT-EENRRRYRQLLFSSDAVLSENI 211
K +A++ +A K E TGT +QD G NT + ++ + + + S VLS +
Sbjct: 92 KHVARSFIAELEKRKQTGKEGTGTDASEMQDSGAVNTCQSDKHVFTKHVAESKVVLSPSS 151
Query: 212 ---SGVILFHE-TLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSEDECTTQGLDD 379
GV++ E + QK D V+ E +G + + G+ L ++E + +
Sbjct: 152 HGKQGVLMMPEYVVGQKPDKQKKKVTRDESQGSVKSQEKTVGITHLQVEQEEVEEEEIST 211
Query: 380 LAQRCAQYKKD 412
+ ++D
Sbjct: 212 TTLTAGENQRD 222
>SB_59586| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 209 ISGVILFHETLYQKADDGTPLVSLLEKK 292
+SG ++ +E L+Q DD TPLV +L ++
Sbjct: 103 LSGSVVSNEWLHQLMDDSTPLVQILAER 130
>SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 6074
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 399 WAQRWARSSRPWVVHSSSDPNSGTTPLSTLMPGMMPFFSSR 277
WAQ ++ SS PW S + SGT S+L ++ +S +
Sbjct: 5909 WAQNYSSSSSPWAPSSPASVRSGTYS-SSLATDILDTYSQK 5948
>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
Length = 3616
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 20 ELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSSDAVL 199
E+Q+ L K AQ +V+ +KG+ D + + K + +N E++R R + S D
Sbjct: 1006 EIQQGLNKAAQCVVSVSKGVSQWDRTCRALRKAEKRDDSDN-EDSRSRSASNVGSDDESR 1064
Query: 200 SE 205
SE
Sbjct: 1065 SE 1066
>SB_11670| Best HMM Match : TP2 (HMM E-Value=3.5)
Length = 543
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +1
Query: 382 RPALRPVQEGRLPLRQVALRAEDWP-QHPLVPSYPGKRQCSRPLRLHLSEPTHRANCRAR 558
+P +R + R+ + +A++A + P P + S P K SRPL + T R N +R
Sbjct: 442 KPCVRKLGLARVTRKVMAVKAFERPLAGPSIDSGPAKTAPSRPLMNPAAALTRRRNLVSR 501
Query: 559 SLT 567
+L+
Sbjct: 502 TLS 504
>SB_6618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 574
Score = 28.7 bits (61), Expect = 4.5
Identities = 24/83 (28%), Positives = 31/83 (37%)
Frame = -1
Query: 626 TAARTTQSPSGRGPGRARHQVRLRARQLARCVGSDRWRRSGREHWRFPG*LGTRGCCGQS 447
T ART S GRG R R R R +R + R R R R +R
Sbjct: 237 THARTAASARGRGNRRGRTGTRSSTRGRSRSTATSRGRTRTRTSTRRRSHTSSREGTRSR 296
Query: 446 SARNATWRSGSRPSCTGRSAGRG 378
S R +S +R + + A G
Sbjct: 297 STRGRKTKSKNRRTKSSSKAQTG 319
>SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)
Length = 942
Score = 28.7 bits (61), Expect = 4.5
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Frame = +1
Query: 265 PSGLP-AGEEGHHPRHQGRQGCRPAVRIGRRMHHPGSGRPRPALRPVQ--EGRLPLRQ-V 432
PSG P G+EG P+ G+ RP+ RR + G+P P+ GRL ++Q V
Sbjct: 333 PSGAPPTGDEGMAPQ-PGQGQARPSYMNKRRQYPAQGGQPGYGAMPLDGPMGRLTVQQPV 391
Query: 433 ALRAED-WPQHPLVPSYP 483
++ Q +VP+ P
Sbjct: 392 GVQPVSLMDQRHIVPTTP 409
>SB_36428| Best HMM Match : MutS_V (HMM E-Value=2.1e-33)
Length = 689
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -2
Query: 259 IVSLLVKGLVEQDHTRDVLGEHSVRAE*QLAITTTVLLC 143
+V+LLV G ++ V+G+ SV + ++ I TTVL C
Sbjct: 425 LVALLVFGQCDRQDETGVVGDISVVVDTRVIIDTTVLKC 463
>SB_9614| Best HMM Match : GBP (HMM E-Value=1e-31)
Length = 708
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 28 GGAQEDRSSNCSSRKGYPGR*RIHRYNG-QAFAGHRRGEHRGEPSS 162
GG+Q + +GYPG R + G QA AG G RG P +
Sbjct: 618 GGSQAEAGGMWGGARGYPGTGRKGGHGGSQAKAGGMWGGARGYPGT 663
>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
Length = 1052
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 459 TPPRTKLSRKTPMFSPATPPSVRANASCQLSSPKSYLMASTTWT 590
+P S +P +SPA P + A+ S +SP SY AS ++T
Sbjct: 711 SPASPSYSPTSPSYSPAIPSNSPASPSYSPASP-SYTPASPSYT 753
>SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19)
Length = 851
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 462 PPRTKLSRKTPMFSP-ATPPSVRANASCQLSSPKS 563
P T +S TP+ P A PP+ +A LSSP S
Sbjct: 252 PLLTTMSLDTPLAEPPAPPPTTPTSAGAPLSSPPS 286
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,756,339
Number of Sequences: 59808
Number of extensions: 585650
Number of successful extensions: 1854
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1833
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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