Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0154
         (695 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    63   2e-12
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    61   7e-12
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    60   1e-11
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    59   4e-11
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    59   4e-11
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    44   1e-06
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    26   0.26 
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     24   1.0  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   5.5  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   7.3  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   7.3  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   9.6  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   9.6  

>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 62.9 bits (146), Expect = 2e-12
 Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 2/139 (1%)
 Frame = +1

Query: 121 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSS 297
           ES P  ++   LTL  +  ++ E    +   A L + W D  L WN  E+G    L ++ 
Sbjct: 25  ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82

Query: 298 ERLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTC 474
            +LW+PDV++ N+A     G +     V +NGS  ++      +   M +  +P D Q C
Sbjct: 83  NKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLYVPPGIFKSTCKMDITWFPFDDQHC 142

Query: 475 TFKFGSRMHNSDEMDFVID 531
             KFGS  ++ +++D V++
Sbjct: 143 DMKFGSWTYDGNQLDLVLN 161


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 61.3 bits (142), Expect = 7e-12
 Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 2/139 (1%)
 Frame = +1

Query: 121 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSS 297
           ES P  ++   LTL  +  ++ E    +   A L + W D  L WN  E+G    L ++ 
Sbjct: 25  ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82

Query: 298 ERLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTC 474
            +LW+PDV++ N+A     G +     V +NGS  ++      +   + +  +P D Q C
Sbjct: 83  NKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLYVPPGIFKSTCKIDITWFPFDDQHC 142

Query: 475 TFKFGSRMHNSDEMDFVID 531
             KFGS  ++ +++D V++
Sbjct: 143 DMKFGSWTYDGNQLDLVLN 161


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 60.5 bits (140), Expect = 1e-11
 Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 2/139 (1%)
 Frame = +1

Query: 121 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSS 297
           ES P  ++   LTL  +  ++ E    +   A L + W D  L WN  E+G    L ++ 
Sbjct: 25  ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82

Query: 298 ERLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTC 474
            +LW+PDV++ N+A     G +     V + GS  ++      +   M +  +P D Q C
Sbjct: 83  NKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGSCLYVPPGIFKSTCKMDITWFPFDDQHC 142

Query: 475 TFKFGSRMHNSDEMDFVID 531
             KFGS  ++ +++D V++
Sbjct: 143 DMKFGSWTYDGNQLDLVLN 161


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 58.8 bits (136), Expect = 4e-11
 Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
 Frame = +1

Query: 220 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTA-GDYALRARVSNNGS 393
           L + W D  L WN  E+G    L ++  +LW+PDV++ N+A     G +     V + GS
Sbjct: 56  LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115

Query: 394 VSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 531
             ++      +   M +  +P D Q C  KFGS  ++ +++D V++
Sbjct: 116 CLYVPPGIFKSTCKMDITWFPFDDQHCDMKFGSWTYDGNQLDLVLN 161


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 58.8 bits (136), Expect = 4e-11
 Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
 Frame = +1

Query: 220 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTA-GDYALRARVSNNGS 393
           L + W D  L WN  E+G    L ++  +LW+PDV++ N+A     G +     V + GS
Sbjct: 56  LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115

Query: 394 VSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 531
             ++      +   M +  +P D Q C  KFGS  ++ +++D V++
Sbjct: 116 CLYVPPGIFKSTCKMDITWFPFDDQHCDMKFGSWTYDGNQLDLVLN 161


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 44.0 bits (99), Expect = 1e-06
 Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 13/152 (8%)
 Frame = +1

Query: 76  SLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNWIDK 243
           ++S ++DS   +YD+   P+     + V +T++ L  +++ E +    +    +  W D 
Sbjct: 40  NISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDP 99

Query: 244 RLSWNAGEWGCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYALRARVSNNGSV 396
           RL++     G  T  V SE    +W PD   +N        ATT+ ++    RV ++GS+
Sbjct: 100 RLAYGKRP-GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RVHHSGSI 155

Query: 397 SWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 492
           +   RL I+    M L   P D Q C  +  S
Sbjct: 156 TRSIRLTITASCPMNLQYLPMDRQLCHIEIES 187


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 361 ALRARVSNNGSVSWIKRLDISTPISMQLDNWPND 462
           A+   +  N + SW + ++  + + M LDNW ND
Sbjct: 272 AIEGIIFFNLAKSWPQLIEKWSRVEMALDNWKND 305


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 666 RGASPERHLEHCHASFHLATVLAL 595
           +  +P   L HCH  FH+   +AL
Sbjct: 593 KATNPGYWLFHCHIEFHVEVGMAL 616


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -3

Query: 408 LYPG-DGAVIRYTGAESVVPGGGC 340
           LY G DG+VI     E VV G GC
Sbjct: 348 LYLGSDGSVILKNYKEMVVVGCGC 371


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 666 RGASPERHLEHCHASFHL 613
           R  +P   L HCH  FH+
Sbjct: 660 RADNPGYWLFHCHFLFHI 677


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -3

Query: 63   AFCRTSYSTSEEKR*QNNIS 4
            A C   YST EEK  Q N S
Sbjct: 1374 AVCDACYSTIEEKNLQVNES 1393


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 185 RMLACLKCRVRLTTILESGGDSRS 114
           R+  C++C      ILE  GD  S
Sbjct: 509 RLFTCMECPNNYPWILEPTGDGFS 532


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 666 RGASPERHLEHCHASFHL 613
           R  +P   L HCH  FH+
Sbjct: 660 RANNPGFWLFHCHFLFHI 677


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,712
Number of Sequences: 336
Number of extensions: 4074
Number of successful extensions: 28
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)