Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0153
(668 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19067| Best HMM Match : PDZ (HMM E-Value=1.6e-12) 111 4e-25
SB_27031| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_33275| Best HMM Match : PDZ (HMM E-Value=5.2e-11) 42 5e-04
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 8e-04
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35) 37 0.013
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.023
SB_36084| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.023
SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.030
SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.039
SB_26957| Best HMM Match : PDZ (HMM E-Value=0) 34 0.12
SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40) 33 0.28
SB_21416| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_57032| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.37
SB_42356| Best HMM Match : PDZ (HMM E-Value=5.7e-19) 32 0.37
SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0) 32 0.49
SB_44409| Best HMM Match : PDZ (HMM E-Value=7.1e-33) 31 0.64
SB_31410| Best HMM Match : PDZ (HMM E-Value=1.1e-15) 31 0.64
SB_12379| Best HMM Match : PDZ (HMM E-Value=4.7e-19) 31 0.85
SB_11669| Best HMM Match : PDZ (HMM E-Value=6.4e-15) 31 0.85
SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.85
SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3) 31 1.1
SB_28720| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17) 30 1.5
SB_51123| Best HMM Match : PDZ (HMM E-Value=3.8e-18) 30 2.0
SB_37649| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_44674| Best HMM Match : PDZ (HMM E-Value=1.8e-05) 29 3.4
SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_1026| Best HMM Match : PDZ (HMM E-Value=9.7e-08) 29 4.5
SB_15491| Best HMM Match : zf-C3HC4 (HMM E-Value=0.079) 29 4.5
SB_14508| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_56567| Best HMM Match : PDZ (HMM E-Value=5.6e-20) 28 6.0
SB_52928| Best HMM Match : PKD (HMM E-Value=0) 28 6.0
SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_33452| Best HMM Match : PDZ (HMM E-Value=1.2e-11) 28 6.0
SB_50345| Best HMM Match : Cadherin (HMM E-Value=0) 28 7.9
SB_31498| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_1022| Best HMM Match : EspF (HMM E-Value=0.51) 28 7.9
>SB_19067| Best HMM Match : PDZ (HMM E-Value=1.6e-12)
Length = 217
Score = 111 bits (268), Expect = 4e-25
Identities = 53/109 (48%), Positives = 74/109 (67%), Gaps = 1/109 (0%)
Frame = +2
Query: 344 SSNVVAPLS-SQSLSLPKATVTQAIRQVVLCKDRNGKCGLRLHSVDSGVFVCYVAANSPG 520
+S +VAP++ S +L+L +A + +R+V+LCKD GK GLR+ +V+ G+FV +V +SP
Sbjct: 18 TSGIVAPVTGSNNLNLRRAEIKGGVREVILCKDNEGKLGLRVRAVNKGIFVAFVHKDSPA 77
Query: 521 ALAGLRFGDQILEINNVTVAGMTMDKCHDILKKAPANNITMAVRDRPFE 667
AL GLRFGDQIL+I+ +AG DK LK A + AVRDRPFE
Sbjct: 78 ALGGLRFGDQILQIDGENMAGFDTDKAMKRLKNASPQRVVFAVRDRPFE 126
>SB_27031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 537
Score = 43.2 bits (97), Expect = 2e-04
Identities = 38/181 (20%), Positives = 82/181 (45%), Gaps = 9/181 (4%)
Frame = +2
Query: 128 LEDMKVDNMMRAQISQHQAPPSYVAPQLCATPSAPSATHVYPTLGEYMGMELSQAVIALN 307
LE + A + + + P + C A A + ++G+ + + + +
Sbjct: 142 LETKPSAQQILASVGKAETDPKMIKIT-CHVFQADEAQVIAKSIGQSFNVAYQEFLKSNG 200
Query: 308 MPEYQIQQVQPTSSNVVAPLSSQSLSLPKATVTQAIRQVVLCKDRNGKCGLRLHSVDSG- 484
+ E ++ + + + LSL + T+A R+VV+ K G+ + V+SG
Sbjct: 201 ISEDSVEDAEYNCVLEAQKILGEDLSL-LSDETKA-REVVVNKKPGEALGVMI--VESGW 256
Query: 485 ------VFVCYVAANSPGALAG-LRFGDQILEINNVTVAGMTMDKCHDILKKA-PANNIT 640
+ ++A + P A +G + GDQIL +NN ++ G+ + +C +++K + P +T
Sbjct: 257 GSMIPTAIIAHLAKDGPAAKSGRVNVGDQILSVNNTSLVGLPLPECQNVIKNSRPGTKVT 316
Query: 641 M 643
+
Sbjct: 317 L 317
>SB_33275| Best HMM Match : PDZ (HMM E-Value=5.2e-11)
Length = 881
Score = 41.9 bits (94), Expect = 5e-04
Identities = 25/78 (32%), Positives = 40/78 (51%)
Frame = +2
Query: 425 VLCKDRNGKCGLRLHSVDSGVFVCYVAANSPGALAGLRFGDQILEINNVTVAGMTMDKCH 604
V C +G G L S V C + A+SP AGL+ GDQIL +N +V ++
Sbjct: 280 VSCGWASGGYGFTLSSQGPCVLSC-ILASSPAHKAGLKPGDQILYVNGSSVERHPHEQVV 338
Query: 605 DILKKAPANNITMAVRDR 658
++ ++P + + VR+R
Sbjct: 339 KLIARSPDGRVNLGVRNR 356
>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2437
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Frame = +2
Query: 482 GVFVCYVAANSPGALAG-LRFGDQILEINNVTVAGMTMDKCHDILKKAP 625
G++V + N P G +R GD+ILE+N V++ G+T + +I+K+AP
Sbjct: 1280 GIYVKSLMLNGPADRNGKIRIGDRILEVNGVSLVGVTHKQAVEIIKRAP 1328
Score = 31.5 bits (68), Expect = 0.64
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +2
Query: 482 GVFVCYVAANSPGALAG-LRFGDQILEINNVTVAGMTMDKCHDILKKAPANNITMAVRDR 658
G+F+ ++ S G LR GDQIL++N V GM+ + +L+K + + + ++ R
Sbjct: 1934 GIFIKTISPGSVAEEDGRLRVGDQILKVNGEDVQGMSHARVIGMLRKI-STTVDLEIK-R 1991
Query: 659 PFE 667
P E
Sbjct: 1992 PAE 1994
>SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2149
Score = 41.1 bits (92), Expect = 8e-04
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Frame = +2
Query: 254 TLGEYMGMELSQAVIALNMPEYQIQQVQPTSSNVVAPLSSQSLSLPKA-TVTQAIRQVVL 430
++ E G++ ++ LN + VQ + + + L+ +S +P A V IR L
Sbjct: 31 SIAERAGLQAGDQILELNG-----ENVQALTKDQIVLLARRSTRVPPALAVISRIRTFDL 85
Query: 431 CKDRNGKCGLRLHSVDSGVFVCYVAANSPGALAGLRFGDQILEINNVTVAGMTMDKCHDI 610
+ R G+ G + VFV V SP G+R GD +L++N V+V ++ +
Sbjct: 86 -RRRRGRFGFTVRG-SGPVFVHNVEPKSPAFTVGMRTGDLVLKVNGVSVRHANAEQVQQV 143
Query: 611 LK 616
++
Sbjct: 144 VE 145
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +2
Query: 485 VFVCYVAANSPGALAGLRFGDQILEINNVTVAGMTMDK 598
V + V NS AGL+ GDQILE+N V +T D+
Sbjct: 22 VVIISVQDNSIAERAGLQAGDQILELNGENVQALTKDQ 59
Score = 33.1 bits (72), Expect = 0.21
Identities = 23/59 (38%), Positives = 30/59 (50%)
Frame = +2
Query: 485 VFVCYVAANSPGALAGLRFGDQILEINNVTVAGMTMDKCHDILKKAPANNITMAVRDRP 661
V V V SP A A L+ GD ILEIN + V T ++L K + T+ V+ RP
Sbjct: 316 VCVRLVDKGSPAAQARLKPGDHILEINGLNVRNKTHAHVVELL-KGSGSQPTLLVQWRP 373
Score = 32.7 bits (71), Expect = 0.28
Identities = 23/59 (38%), Positives = 30/59 (50%)
Frame = +2
Query: 485 VFVCYVAANSPGALAGLRFGDQILEINNVTVAGMTMDKCHDILKKAPANNITMAVRDRP 661
V V V SP A A L+ GD ILEIN + V T ++L K + T+ V+ RP
Sbjct: 484 VCVRSVDKGSPAAQARLKPGDHILEINGLNVRNKTHAHVVELL-KGSGSQPTLLVQWRP 541
>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 1772
Score = 37.1 bits (82), Expect = 0.013
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Frame = +2
Query: 365 LSSQSLSLPKATVTQAIRQVVLCKDRNGKCGLRLHS---VDSGVFVCYVAANSPGALAGL 535
L+ ++ T QA++ V +D GK GL++ G+++ V +S + AGL
Sbjct: 1292 LAVNDVNFDGLTHDQAVKVNVFVED-GGKLGLKIRGGAEYGLGIYIAGVDEHSAASRAGL 1350
Query: 536 RFGDQILEINNVTVAGMTMDKCHDILKKAPANNITMAVRD 655
+ GDQI+++N + ++ LK N+ + ++D
Sbjct: 1351 KCGDQIMDVNGTSFLNISHASAIKALK--ANKNMMVTIKD 1388
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 482 GVFVCYVAANSPGALAGLRFGDQILEINNVTVAGMTMDK 598
G++V + S GL GD IL +N+V G+T D+
Sbjct: 1268 GLYVSSIDTGSVSEAIGLLPGDHILAVNDVNFDGLTHDQ 1306
>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2749
Score = 36.3 bits (80), Expect = 0.023
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Frame = +2
Query: 395 ATVTQAIRQVVLCKDRNGKCGLRLHSVDSGVFVCYVAANSPGALAG----LRFGDQILEI 562
A + + I + L K+ G + + +D+ + + Y+ PG A LR GDQ+L++
Sbjct: 2281 AEIEEGILSIQLLKEDQGIGLMVIGGLDTPLGMLYIKDIQPGTPAEKCGHLRTGDQLLQV 2340
Query: 563 NNVTVAGMTMDKCHDILKKAP 625
N+ + G+T ++LK P
Sbjct: 2341 NDECLVGVTHAYALEVLKNTP 2361
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +2
Query: 506 ANSPGALAGLRFGDQILEINNVTVAGMTMDKCHDILKKAPANNITMAVR 652
++S + +GL GD++LE+N + GMT + + ++ P I + VR
Sbjct: 2699 SDSASSRSGLEIGDEVLEVNGRHMRGMTNVEALEAIRALPYGAIVIRVR 2747
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = +2
Query: 470 SVDSGVFVCYVAANSPGALA-----GLRFGDQILEINNVTVAGMTMDKCHDILKKAPANN 634
+V GVF+ VA+ A GLR GD+ILE+N + M + I + P
Sbjct: 33 TVVEGVFIKSVASGKSADQAQSVSGGLRPGDEILEVNGTFLRYMDQEDVIKIFRDLPVTT 92
Query: 635 I 637
I
Sbjct: 93 I 93
>SB_36084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 751
Score = 36.3 bits (80), Expect = 0.023
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = +2
Query: 485 VFVCYVAANSPGALAGLRFGDQILEINNVTVAGMTMDKCHDILKKA 622
VFV VA N P AGL GDQI+ +N V T + ++++K+
Sbjct: 187 VFVRQVAPNGPADKAGLSSGDQIVSVNGNQVLNRTYSQVIELIQKS 232
>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 35.9 bits (79), Expect = 0.030
Identities = 17/44 (38%), Positives = 28/44 (63%)
Frame = +2
Query: 530 GLRFGDQILEINNVTVAGMTMDKCHDILKKAPANNITMAVRDRP 661
GL+ GDQ+L +N V+V G +K D+LK+A ++ + V+ P
Sbjct: 575 GLKRGDQLLSVNGVSVEGENHEKAVDLLKEA-QGSVRLVVKYTP 617
>SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1393
Score = 35.5 bits (78), Expect = 0.039
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Frame = +2
Query: 368 SSQSLSLPKATVTQAIRQVVLCKDRNGKCGLRL-HSVDSGVFVCYVAANSPGAL---AGL 535
S SLS + +R+ ++CK + G L++ + G F+ + L
Sbjct: 6 SKSSLSRKGKHWSHHVRESIVCKSKEGSFNLKIVGGAEFGEFINIGDLKEDKVVYKKGKL 65
Query: 536 RFGDQILEINNVTVAGMTMDKCHDILKKAPANNITM 643
GD ILEINN VAG T +++ K N +++
Sbjct: 66 LCGDVILEINNKPVAGYTRPDVLELISKDGRNAVSL 101
>SB_26957| Best HMM Match : PDZ (HMM E-Value=0)
Length = 1685
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +2
Query: 479 SGVFVCYVAANSPGALAG-LRFGDQILEINNVTVAGMTMDKCHDILKK 619
+G+F+ +A S AL G LR DQI+++ +V++ G + +ILK+
Sbjct: 655 AGIFIKSIAHGSTAALDGRLRVNDQIIQVGSVSLHGKNNGEAVEILKQ 702
Score = 31.5 bits (68), Expect = 0.64
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Frame = +2
Query: 482 GVFVCYVAANSPGALAG-LRFGDQILEINNVTVAGMTMDKCHDILKKA--PANNITMAVR 652
GV V +V NS A G L+ GDQILE++ + + ++ +++++A P + ++
Sbjct: 1319 GVHVRHVLENSSVARLGELKAGDQILEVDGHDLRNASHEEAVEVIRRARSPVRFVVRTIQ 1378
Query: 653 DR 658
D+
Sbjct: 1379 DK 1380
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 485 VFVCYVAANSPGALAG-LRFGDQILEINNVTVAGMTMDKCHDILK 616
+F+ V + P G ++ D+ILE+N V GM+ + +LK
Sbjct: 1531 IFIVDVKSGGPAEQDGRIKQADEILEVNRTPVRGMSHYQASTVLK 1575
>SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40)
Length = 933
Score = 32.7 bits (71), Expect = 0.28
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 473 VDSGVFVCYVAANSPGALAG-LRFGDQILEINNVTVAGMTMDKCHDILKKAPAN 631
+D G+FV V A G L+ DQ+L +NNV+ +T + D L++A N
Sbjct: 317 IDMGIFVKSVIAGGAAFKDGRLKAEDQLLSVNNVSFMRLTNTEAIDGLRRAMQN 370
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 485 VFVCYVAANSPGALAG-LRFGDQILEINNVTVAGMTMDKCHDILK 616
+FV + A G LR GDQI+E+N + + G + +IL+
Sbjct: 198 IFVKSILAKGAAIEDGRLRGGDQIIEVNGMPMTGKNQGEAVNILR 242
>SB_21416| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +2
Query: 482 GVFVCYVAANSPGALAGL-RFGDQILEINNVTVAGMTMDKCHDILKKAPANNITMAVR 652
G+F+ + GL D++LE+N + V+G T+D+ D++ A ++N+ + V+
Sbjct: 195 GIFISRLVPGGLAESTGLLAVNDEVLEVNGIDVSGKTLDQVTDMM-IANSHNLIITVK 251
>SB_57032| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 446
Score = 32.3 bits (70), Expect = 0.37
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +3
Query: 255 HWENIWAWSCPRL*LRLTCPNTK--YNRFSQQVVMWL 359
H+ +W W L R TCP+ + Y+ ++Q+VV+W+
Sbjct: 33 HYICLWKWIHAHLTPRATCPHCRKGYHPWNQEVVLWI 69
>SB_42356| Best HMM Match : PDZ (HMM E-Value=5.7e-19)
Length = 619
Score = 32.3 bits (70), Expect = 0.37
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 476 DSGVFVCYVAANSPGALAGLRFGDQILEINNVTVAGMTMDKCHDILK 616
++ ++V V P A GL+ GD+ILE+N + + T D+ LK
Sbjct: 558 ETSIYVTKVQPEGPAAF-GLKPGDKILEVNGINLRNTTHDRAVLFLK 603
>SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)
Length = 1277
Score = 31.9 bits (69), Expect = 0.49
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Frame = +2
Query: 404 TQAIRQVVLCKDRNGKCGLRLHSVDS-----GVFVCYVAANSPGALAG-LRFGDQILEIN 565
TQ R V + + N G + D GVFV + S G L GD+ILE+N
Sbjct: 108 TQGTRAVEIKRTHNQPLGFFIRQGDGWGRKDGVFVSRITPGSLVDCDGSLAVGDEILEVN 167
Query: 566 NVTVAGMTMDKCHDIL 613
V +AG + HD++
Sbjct: 168 GVCLAGF---RVHDVV 180
>SB_44409| Best HMM Match : PDZ (HMM E-Value=7.1e-33)
Length = 718
Score = 31.5 bits (68), Expect = 0.64
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 500 VAANSPGALAGLRFGDQILEINNVTV 577
+A SP A LR GD+ILE+N +V
Sbjct: 73 IAQGSPAERANLRIGDEILEVNGTSV 98
>SB_31410| Best HMM Match : PDZ (HMM E-Value=1.1e-15)
Length = 556
Score = 31.5 bits (68), Expect = 0.64
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 482 GVFVCYVAANSPGALAGLRFGDQILEINNVTVAGMTMDKCHDIL 613
GV++ V ++S GL GDQI+E+N + + + ++L
Sbjct: 154 GVYISQVDSDSQAEKQGLHLGDQIIEVNGIDFEQIAQNSAINLL 197
>SB_12379| Best HMM Match : PDZ (HMM E-Value=4.7e-19)
Length = 129
Score = 31.1 bits (67), Expect = 0.85
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +2
Query: 440 RNGK-CGLRLHSVDS-GVFVCYVAANSPGALAGLRFGDQILEINNVTVAGMTMDKCHDIL 613
R GK G+++ + G+FV V +P GLR GD+IL N++ +T ++ IL
Sbjct: 38 REGKGIGIQVQGGNKHGIFVAGVREGNPAHRQGLRRGDKILMANDIDFKDITREEAVLIL 97
>SB_11669| Best HMM Match : PDZ (HMM E-Value=6.4e-15)
Length = 85
Score = 31.1 bits (67), Expect = 0.85
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Frame = +2
Query: 416 RQVVLCKDRNGKCGLRLHSVDSGVFVCYVAANSPGALA---GLRFGDQILEINNVTVAGM 586
++ L D G G RL + V+ +PG A GLR DQIL IN + M
Sbjct: 4 QEFALVLDGGGPWGFRLKGGKDFGQIPTVSQLTPGGKAITNGLRVEDQILSINGMGCEDM 63
Query: 587 TMDKCHDILKKAPANNITMAVR 652
T + + +K+ N + + VR
Sbjct: 64 THMEAQESIKRT-GNALRLQVR 84
>SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1653
Score = 31.1 bits (67), Expect = 0.85
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +2
Query: 440 RNGK-CGLRLHSVDS-GVFVCYVAANSPGALAGLRFGDQILEINNVTVAGMTMDKCHDIL 613
R GK G+++ + G+FV V +P GLR GD+IL N++ +T ++ IL
Sbjct: 929 REGKGIGIQVQGGNKHGIFVAGVREGNPAHRQGLRRGDKILMANDIDFKDITREEAVLIL 988
>SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3)
Length = 549
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 533 LRFGDQILEINNVTVAGMTMDKCHDILKKAPANNITMAVRDR 658
L+ GD +LE N ++ G+T DK IL+K N V R
Sbjct: 270 LQEGDHLLEANGESMVGVTNDKAIAILRKVAETNQARLVISR 311
>SB_28720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 672
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +2
Query: 476 DSGVFVCYVAANSPGALAG-LRFGDQILEINNVTVAGM---TMDKCHDILKK 619
D G+F+ ++ N P G L GD+IL++ + T DK HD+ K
Sbjct: 403 DEGIFISRISENGPAGRDGILHVGDKILKVRHHVTRDSHHDTRDKHHDMRDK 454
>SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17)
Length = 1038
Score = 30.3 bits (65), Expect = 1.5
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Frame = +2
Query: 386 LPKATVTQAIRQVVLCKDRNGKCGLRL-HSVDSGVFVCYVAANSPGALAG----LRFGDQ 550
+ K + + + + K NG GL L DS + YV+ P + A +R GD+
Sbjct: 110 IEKGNGDEGVLTLEMIKPSNGYLGLVLVGGADSPLKNHYVSDILPNSCASKCDCVRIGDE 169
Query: 551 ILEINNVTVAGMTMDKCHDILKKAPA 628
+LE+N ++G T I + P+
Sbjct: 170 LLEVNGHKLSGRTHADALTIFRSLPS 195
>SB_51123| Best HMM Match : PDZ (HMM E-Value=3.8e-18)
Length = 182
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 542 GDQILEINNVTVAGMTMDKCHDILKKAPANNITMAVRD 655
GDQILE+NN + T D + L++ PA +RD
Sbjct: 74 GDQILEVNNCDLREATHDMAINALRQTPAIVRLRVLRD 111
>SB_37649| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 188
Score = 29.9 bits (64), Expect = 2.0
Identities = 23/87 (26%), Positives = 37/87 (42%)
Frame = +2
Query: 161 AQISQHQAPPSYVAPQLCATPSAPSATHVYPTLGEYMGMELSQAVIALNMPEYQIQQVQP 340
A IS P V ++ + S P+ + E++ LS A+ P Q Q QP
Sbjct: 5 ASISDQPNIPDIV-DEINTSSSKPAEYYYSDEWNEHVDEVLSS--FAVPQPSTQTSQSQP 61
Query: 341 TSSNVVAPLSSQSLSLPKATVTQAIRQ 421
+ + PLS Q + +AT + + Q
Sbjct: 62 VAHSQPQPLSQQQPQVTRATTSTTVTQ 88
>SB_44674| Best HMM Match : PDZ (HMM E-Value=1.8e-05)
Length = 84
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +2
Query: 482 GVFVCYVAANSPGALAG-LRFGDQILEINNVTVAGMTMDKCHDILKKAPANNITMAVRDR 658
G+F+ +A + G L+ GD++L IN+ + D ++L P+ + RDR
Sbjct: 1 GIFISKIAKDGTAERDGRLKVGDKVLSINSRDMKNAKHDDAVNMLTSGPSFVTLIVYRDR 60
>SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4247
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 125 SLEDMKVDNMMRAQISQHQAPPSYVAPQLCATPSAPSATHVYPT 256
+L+ + D +++ +Q QAP Y P+ TPS S ++ T
Sbjct: 2272 TLQITQADAILKGMSTQPQAPKPYKIPKTKTTPSLSSVATMFST 2315
>SB_1026| Best HMM Match : PDZ (HMM E-Value=9.7e-08)
Length = 924
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +2
Query: 434 KDRNGKCGLRLHSVDSGVFVCYVAANSPGALAGLRFGDQILEINNV 571
+D NG G+ + + +++ V + G++ GD+IL +N+V
Sbjct: 661 EDNNGVIGISVTCRNDALYISQVEEGRLAHVQGVQAGDEILAVNDV 706
>SB_15491| Best HMM Match : zf-C3HC4 (HMM E-Value=0.079)
Length = 689
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +3
Query: 255 HWENIWAWSCPRL*LRLTCPNTK--YNRFSQQVVMWL 359
H+ +W W L R TCP+ + + + Q+V++W+
Sbjct: 205 HYPCLWKWVHAHLTPRSTCPHCRKGFYLWHQEVILWI 241
>SB_14508| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1392
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 476 DSGVFVCYVAANSPGALAG--LRFGDQILEINNVTVAGMTMDKCHDILKKA 622
D G+FV A PG+ L+ GD+IL I+ +V + + HD+++ A
Sbjct: 528 DPGIFV---KAVKPGSSVSNILKPGDKILSIDGQSVTNVLQAQAHDLIRAA 575
>SB_56567| Best HMM Match : PDZ (HMM E-Value=5.6e-20)
Length = 285
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 479 SGVFVCYVAANSPGAL-AGLRFGDQILEINNVTVAGMTMDKCHDILK 616
S VF+ + N P GLR GD +L +N+ ++ G+ + ILK
Sbjct: 174 SPVFIVSITPNGPADKHGGLRPGDILLAVNDRSLVGLEHSQAVRILK 220
>SB_52928| Best HMM Match : PKD (HMM E-Value=0)
Length = 1624
Score = 28.3 bits (60), Expect = 6.0
Identities = 23/83 (27%), Positives = 41/83 (49%)
Frame = +2
Query: 305 NMPEYQIQQVQPTSSNVVAPLSSQSLSLPKATVTQAIRQVVLCKDRNGKCGLRLHSVDSG 484
+MP +++Q SNV+ S S+ +P +++ + QVVL N K G+RL + +
Sbjct: 954 SMPPNSAREIQ-LPSNVIR--SQSSIIIPGYSLSPGVYQVVLKVVLNSKEGVRLENSEQK 1010
Query: 485 VFVCYVAANSPGALAGLRFGDQI 553
Y+ ++P A + G I
Sbjct: 1011 ----YIKISTPAVKAVIAGGTAI 1029
>SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1446
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +2
Query: 458 LRLHSVDSGVFVCYVAANSPGALAG-LRFGDQILEINNVTVAGMTMDKCHDIL 613
L +H +D+ F+ +++ S AL L GD+I+E+N +V ++ + +L
Sbjct: 807 LGIH-IDNSKFISFISPGSTAALNPMLAIGDKIVEVNGQSVENLSQLETEKLL 858
>SB_33452| Best HMM Match : PDZ (HMM E-Value=1.2e-11)
Length = 278
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Frame = +2
Query: 419 QVVLCKDRNGKCGLRLHS----VDSGVFVCYVAANSPGA-LAGL-RFGDQILEINNVTVA 580
++ L K NG G + + G+F+ + +S LAGL GD++LEIN +
Sbjct: 189 EIELQKPDNGLFGFFIQKGYKQFNKGIFISRIMDSSSAKFLAGLLNPGDEVLEINGQSTK 248
Query: 581 GMTMDKCHDIL 613
T + H+I+
Sbjct: 249 TKTTAEVHNIM 259
>SB_50345| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1021
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +2
Query: 95 FSVSIMSFYPSLEDMKVDNMMRAQISQHQAPPSYVAPQLCATPSAPSAT-HVYPTLGEY 268
+S + ++ YPS E + + Q QAPP + + C ++P++T H + TL +Y
Sbjct: 862 YSQATINMYPSNEMLDTVGRGKTSQGQGQAPP--LPNKTCLQMNSPASTIHRHHTLPQY 918
>SB_31498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 508
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +2
Query: 479 SGVFVCYVAANSPGALAGLRFGDQILEINNVTVAGMTMDKCHDILKKAPANNITMAVRDR 658
+G+FV + + +GL GDQILE N + + T ++ L K A++ + V+
Sbjct: 172 TGIFVSELDSGKDRP-SGLNVGDQILEYNGMDMTMCTAEQAMLELCKPTADSAQVLVQYN 230
Query: 659 P 661
P
Sbjct: 231 P 231
>SB_1022| Best HMM Match : EspF (HMM E-Value=0.51)
Length = 310
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 152 MMRAQISQHQAPPSYVAPQLCAT 220
++RAQ++ H+ PP + QL AT
Sbjct: 259 LIRAQLAGHRVPPQLIRAQLAAT 281
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,742,091
Number of Sequences: 59808
Number of extensions: 443957
Number of successful extensions: 1379
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 1240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1376
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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