Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0153
         (668 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26350.1 68417.m03788 F-box family protein contains F-box dom...    32   0.40 
At4g17740.2 68417.m02649 C-terminal processing protease, putativ...    31   0.69 
At4g17740.1 68417.m02648 C-terminal processing protease, putativ...    31   0.69 
At1g78600.1 68414.m09160 zinc finger (B-box type) family protein...    29   2.1  
At4g37610.1 68417.m05321 TAZ zinc finger family protein / BTB/PO...    29   3.7  
At1g21610.2 68414.m02703 wound-responsive family protein similar...    29   3.7  
At1g21610.1 68414.m02702 wound-responsive family protein similar...    29   3.7  
At5g46390.2 68418.m05710 peptidase S41 family protein similar to...    28   4.9  
At5g46390.1 68418.m05709 peptidase S41 family protein similar to...    28   4.9  
At3g54870.1 68416.m06079 armadillo/beta-catenin repeat family pr...    28   4.9  
At5g57950.1 68418.m07251 26S proteasome regulatory subunit, puta...    28   6.5  
At1g58220.1 68414.m06612 myb family transcription factor contain...    28   6.5  
At5g60610.1 68418.m07606 F-box family protein contains F-box dom...    27   8.5  
At1g18840.1 68414.m02346 calmodulin-binding family protein low s...    27   8.5  

>At4g26350.1 68417.m03788 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 431

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +3

Query: 192 HMLLR--NFVPRLVPLVLLMFTQHWENIWAWSCPRL*LRLTCPNTKYNRF 335
           H+LLR  +F+P    +V  + ++ W ++W W  P+L    T  N ++ +F
Sbjct: 10  HLLLRILSFIPTKDVIVTSLLSKRWGSLWRW-VPKLEYDFTRQNMRFVKF 58


>At4g17740.2 68417.m02649 C-terminal processing protease, putative
           similar to C-terminal protease precursor [Spinacia
           oleracea] GI:999435; similar to SP|Q44879| (Bartonella
           bacilliformis)
          Length = 505

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +2

Query: 479 SGVFVCYVAANSPGALAGLRFGDQILEINNVTVAGMTMDKCHDILKKAPANNITMAVRDR 658
           +G+ V   A   P   AG+  GD I  I+N T   +T+     +L+    + + +A+R  
Sbjct: 217 AGLVVISAAPGGPANRAGILPGDVIQGIDNTTTETLTIYDAAQMLQGPEGSAVELAIRSG 276

Query: 659 P 661
           P
Sbjct: 277 P 277


>At4g17740.1 68417.m02648 C-terminal processing protease, putative
           similar to C-terminal protease precursor [Spinacia
           oleracea] GI:999435; similar to SP|Q44879| (Bartonella
           bacilliformis)
          Length = 515

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +2

Query: 479 SGVFVCYVAANSPGALAGLRFGDQILEINNVTVAGMTMDKCHDILKKAPANNITMAVRDR 658
           +G+ V   A   P   AG+  GD I  I+N T   +T+     +L+    + + +A+R  
Sbjct: 227 AGLVVISAAPGGPANRAGILPGDVIQGIDNTTTETLTIYDAAQMLQGPEGSAVELAIRSG 286

Query: 659 P 661
           P
Sbjct: 287 P 287


>At1g78600.1 68414.m09160 zinc finger (B-box type) family protein
           similar to zinc finger protein GI:3618316 from [Oryza
           sativa]
          Length = 299

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
 Frame = +2

Query: 362 PLSSQSLSLPKATVTQAIRQVVLC-KDRN---GKCGLRLHSVDSGVFVCYVAANSPGALA 529
           PLS+ + S+PK  + Q       C +DR     KC + +H+V+      +V+A+    L 
Sbjct: 46  PLSASASSIPKCDICQEASGFFFCLQDRALLCRKCDVAIHTVNP-----HVSAHQRFLLT 100

Query: 530 GLRFGDQILEINNVTVAGMTMD 595
           G++ G + ++    T +  T D
Sbjct: 101 GIKVGLESIDTGPSTKSSPTND 122


>At4g37610.1 68417.m05321 TAZ zinc finger family protein / BTB/POZ
           domain-containing protein contains Pfam PF00651 :
           BTB/POZ domain; contains Pfam PF02135 : TAZ zinc finger;
           similar to Speckle-type POZ protein (SP:O43791) [Homo
           sapiens]
          Length = 368

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = -2

Query: 355 HITTCWLNLLYLVFGHVKRNYSLGQLHAHIF---SQCWVNMSSTRGTRRGTKLRSNI*RW 185
           H+  C L  +       KR + L +LH+ I     QC V + S+   R  T+ R +  RW
Sbjct: 282 HLAGCKLRSIPGGCSRCKRMWQLLELHSRICVDSEQCKVPLCSSLKERMKTQSRKDEKRW 341

Query: 184 CLMLR 170
            L++R
Sbjct: 342 KLLVR 346


>At1g21610.2 68414.m02703 wound-responsive family protein similar to
           wound-responsive protein 14.05 (GI:16506638) [Castanea
           sativa]; ESTs gb T42839 and gb|AA395192 come from this
           gene
          Length = 683

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 275 MELSQAVIALNMPEYQIQQVQPTSSNVVAPLSSQSLSLP 391
           M   Q V+AL  PE+   +V P   N+  P ++  L+LP
Sbjct: 644 MAEKQVVLALKKPEHPQTRVIPAPQNLNIPRTTPDLNLP 682


>At1g21610.1 68414.m02702 wound-responsive family protein similar to
           wound-responsive protein 14.05 (GI:16506638) [Castanea
           sativa]; ESTs gb T42839 and gb|AA395192 come from this
           gene
          Length = 684

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 275 MELSQAVIALNMPEYQIQQVQPTSSNVVAPLSSQSLSLP 391
           M   Q V+AL  PE+   +V P   N+  P ++  L+LP
Sbjct: 645 MAEKQVVLALKKPEHPQTRVIPAPQNLNIPRTTPDLNLP 683


>At5g46390.2 68418.m05710 peptidase S41 family protein similar to
           C-terminal peptidase of the D1 protein [Hordeum vulgare
           subsp vulgare] GI:1296805; contains Pfam profiles
           PF03572: Peptidase family S41B, PF00595: PDZ domain
           (Also known as DHR or GLGF)
          Length = 489

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
 Frame = +2

Query: 455 GLRLHSVDSG-----VFVCYVAANSPGALAGLRFGDQILEINNVTVAGMTMDKCHDILKK 619
           G+ L  V  G     + V  +  +S   +AG++ GD+IL +N + V+G +  +   +L+ 
Sbjct: 201 GINLREVSDGGGNVKLKVLGLVLDSAADIAGVKQGDEILAVNGMDVSGKSSFEVSSLLQG 260

Query: 620 APANNITMAVR 652
                + + V+
Sbjct: 261 PSKTFVVLKVK 271


>At5g46390.1 68418.m05709 peptidase S41 family protein similar to
           C-terminal peptidase of the D1 protein [Hordeum vulgare
           subsp vulgare] GI:1296805; contains Pfam profiles
           PF03572: Peptidase family S41B, PF00595: PDZ domain
           (Also known as DHR or GLGF)
          Length = 428

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
 Frame = +2

Query: 455 GLRLHSVDSG-----VFVCYVAANSPGALAGLRFGDQILEINNVTVAGMTMDKCHDILKK 619
           G+ L  V  G     + V  +  +S   +AG++ GD+IL +N + V+G +  +   +L+ 
Sbjct: 201 GINLREVSDGGGNVKLKVLGLVLDSAADIAGVKQGDEILAVNGMDVSGKSSFEVSSLLQG 260

Query: 620 APANNITMAVR 652
                + + V+
Sbjct: 261 PSKTFVVLKVK 271


>At3g54870.1 68416.m06079 armadillo/beta-catenin repeat family
           protein / kinesin motor family protein kinesin,
           Syncephalastrum racemosum, AJ225894
          Length = 941

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +2

Query: 320 QIQQVQPTSSNVVAPLSSQSLSLPKAT--VTQAIRQVVLCKDR 442
           +IQQ  P +SN    LSS SL+LP  T  V   I      KDR
Sbjct: 20  RIQQHLPPNSNHAVSLSSSSLNLPARTSIVAPGIAHSSRLKDR 62


>At5g57950.1 68418.m07251 26S proteasome regulatory subunit,
           putative contains similarity to 26S proteasome
           non-ATPase subunit 9 SP:O00233 from [Homo sapiens]
          Length = 227

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 509 NSPGALAGLRFGDQILEINNV 571
           +SP A  GL+ GDQ+L+  NV
Sbjct: 152 SSPAAEGGLQLGDQVLKFGNV 172


>At1g58220.1 68414.m06612 myb family transcription factor contains
           Pfam profile: PF00249: Myb-like DNA-binding domain
          Length = 834

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 167 ISQHQAPPSYVAPQLCATPSAPSATHVYP 253
           I  +  PPS+ + +L  T  AP+AT V P
Sbjct: 631 IQSNSVPPSFASSRLVPTQRAPAATVVTP 659


>At5g60610.1 68418.m07606 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 388

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 207 NFVPRLVPLVLLMFTQHWENIWAWSCPRL 293
           +FVP  V +   + ++ WE++W W  P+L
Sbjct: 17  SFVPTKVAVSTSILSKRWESLWKW-VPKL 44


>At1g18840.1 68414.m02346 calmodulin-binding family protein low
           similarity to SF16 protein [Helianthus annuus]
           GI:560150; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 572

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = +2

Query: 314 EYQIQQVQPTSSNVVAPLSSQSLSLPKATVTQAIRQVVLCKDRNGKCGLRLHSVDSGV 487
           E Q+ +VQPT S  VA +   SLS     + Q I  V +     G    R   +  G+
Sbjct: 78  EIQVSEVQPTDSQDVASVPDDSLS-ESEKIQQEIAAVTVQAAYRGYLARRAFKILKGI 134


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,404,864
Number of Sequences: 28952
Number of extensions: 299398
Number of successful extensions: 760
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)