Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0151
(389 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 128 4e-31
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 124 4e-30
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom... 33 0.016
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc... 28 0.44
SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces ... 27 1.4
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 27 1.4
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 25 4.1
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 25 4.1
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 24 7.2
SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce... 24 7.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 24 7.2
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 24 9.5
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 24 9.5
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 128 bits (308), Expect = 4e-31
Identities = 63/131 (48%), Positives = 82/131 (62%), Gaps = 2/131 (1%)
Frame = +3
Query: 3 WALTNIASGTRQHTMAVVDGGAVPKLISLLGQGGV-VGEQCAWALGNIAGDGPETRDMIL 179
WALTNIASGT T VVD GAVP+ I LL V EQ WALGNIAGD RD +L
Sbjct: 142 WALTNIASGTTDQTRIVVDSGAVPRFIQLLSSPEKDVREQVVWALGNIAGDSSACRDYVL 201
Query: 180 NAGIMQALVPLLNAQ-TPTSQLRIAVWTYSNLCRNKNPLVQFDLVAPALPYISDLLEISD 356
G++Q L+ +L + + S LR A WT SNLCR KNP + ++ A+P ++ LL D
Sbjct: 202 GNGVLQPLLNILQSSASDVSMLRNATWTLSNLCRGKNPPPNWSTISVAVPILAKLLYSED 261
Query: 357 QDVLADSCWAL 389
+++ D+CWA+
Sbjct: 262 VEIIVDACWAI 272
Score = 60.1 bits (139), Expect = 1e-10
Identities = 33/130 (25%), Positives = 62/130 (47%), Gaps = 1/130 (0%)
Frame = +3
Query: 3 WALTNIASGTRQHTMAVVDGGAVPKLISLLGQGGV-VGEQCAWALGNIAGDGPETRDMIL 179
WA++ ++ G + A++D G P+L+ LL V + ++GNI +I+
Sbjct: 270 WAISYLSDGPNEKIGAILDVGCAPRLVELLSSPSVNIQTPALRSVGNIVTGTDAQTQIII 329
Query: 180 NAGIMQALVPLLNAQTPTSQLRIAVWTYSNLCRNKNPLVQFDLVAPALPYISDLLEISDQ 359
+ G + A LL+ Q + + A WT SN+ +Q + + +P + LL +D
Sbjct: 330 DCGALNAFPSLLSHQKENIR-KEACWTISNITAGNTQQIQAIIESNLIPPLVHLLSYADY 388
Query: 360 DVLADSCWAL 389
++CWA+
Sbjct: 389 KTKKEACWAI 398
Score = 37.1 bits (82), Expect = 0.001
Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Frame = +3
Query: 51 VVDGGAVPKLISLL-GQGGVVGEQCAWALGNIAGDGPETRDMILNAGIMQALVPLLNAQT 227
V+ G V + + L + ++ + AWAL NIA + +++++G + + LL+ +
Sbjct: 116 VIACGVVDRFVQFLESEHHLLQFEAAWALTNIASGTTDQTRIVVDSGAVPRFIQLLS--S 173
Query: 228 PTSQLR-IAVWTYSNLCRNKNPLVQFDLVAPALPYISDLLEISDQDV--LADSCWAL 389
P +R VW N+ + + + L L + ++L+ S DV L ++ W L
Sbjct: 174 PEKDVREQVVWALGNIAGDSSACRDYVLGNGVLQPLLNILQSSASDVSMLRNATWTL 230
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 124 bits (300), Expect = 4e-30
Identities = 57/130 (43%), Positives = 81/130 (62%), Gaps = 1/130 (0%)
Frame = +3
Query: 3 WALTNIASGTRQHTMAVVDGGAVPKLISLLGQGGV-VGEQCAWALGNIAGDGPETRDMIL 179
WALTN+ASG+ T VV+ AVP +SLL V EQ WALGNIAGD P RD +L
Sbjct: 143 WALTNVASGSSNQTHVVVEANAVPVFVSLLSSSEQDVREQAVWALGNIAGDSPMCRDHVL 202
Query: 180 NAGIMQALVPLLNAQTPTSQLRIAVWTYSNLCRNKNPLVQFDLVAPALPYISDLLEISDQ 359
G+++ L+ ++ + S LR + WT SN+CR KNP ++ ++ +P +S L+ D+
Sbjct: 203 QCGVLEPLLNIIESNRRLSMLRNSTWTLSNMCRGKNPQPDWNSISQVIPVLSKLIYTLDE 262
Query: 360 DVLADSCWAL 389
DVL D+ WA+
Sbjct: 263 DVLVDALWAI 272
Score = 64.9 bits (151), Expect = 4e-12
Identities = 39/132 (29%), Positives = 71/132 (53%), Gaps = 3/132 (2%)
Frame = +3
Query: 3 WALTNIASGTRQHTMAVVDGGAVPKLISLLGQGGV-VGEQCAWALGNIA-GDGPETRDMI 176
WA++ ++ G + A++D G +L+ LL V ++GNI GD +T+ +I
Sbjct: 270 WAISYLSDGANEKIQAIIDAGIPRRLVELLMHPSAQVQTPALRSVGNIVTGDDVQTQ-VI 328
Query: 177 LNAGIMQALVPLLNAQTPTSQLRI-AVWTYSNLCRNKNPLVQFDLVAPALPYISDLLEIS 353
+N G + AL+ LL++ P +R A WT SN+ + +Q+ + A +P + LL +
Sbjct: 329 INCGALSALLSLLSS--PRDGVRKEACWTISNITAGNSSQIQYVIEANIIPPLIHLLTTA 386
Query: 354 DQDVLADSCWAL 389
D + ++CWA+
Sbjct: 387 DFKIQKEACWAI 398
Score = 41.9 bits (94), Expect = 3e-05
Identities = 29/129 (22%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Frame = +3
Query: 18 IASGTRQHTMAVVDGGAVPKLISLLG-QGGVVGEQCAWALGNIAGDGPETRDMILNAGIM 194
++ T V+D G VP+ + L + ++ + +WAL N+A +++ A +
Sbjct: 106 LSKETNPPIQKVIDAGVVPRFVEFLSHENNLLKFEASWALTNVASGSSNQTHVVVEANAV 165
Query: 195 QALVPLLNAQTPTSQLRIAVWTYSNLCRN----KNPLVQFDLVAPALPYISDLLEISDQD 362
V LL++ + + AVW N+ + ++ ++Q ++ P L I +S
Sbjct: 166 PVFVSLLSSSEQDVREQ-AVWALGNIAGDSPMCRDHVLQCGVLEPLLNIIESNRRLS--- 221
Query: 363 VLADSCWAL 389
+L +S W L
Sbjct: 222 MLRNSTWTL 230
>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 33.1 bits (72), Expect = 0.016
Identities = 24/98 (24%), Positives = 44/98 (44%)
Frame = +3
Query: 9 LTNIASGTRQHTMAVVDGGAVPKLISLLGQGGVVGEQCAWALGNIAGDGPETRDMILNAG 188
L N+A+ + ++ A+++ A+ KL L+ V + A + E + +LN G
Sbjct: 358 LRNLAASSERNKRAIIEANAIQKLRCLILDAPVSVQSEMTACLAVLALSDEFKSYLLNFG 417
Query: 189 IMQALVPLLNAQTPTSQLRIAVWTYSNLCRNKNPLVQF 302
I L+PL ++ + Q A NL N + +F
Sbjct: 418 ICNVLIPLTDSMSIEVQGNSAA-ALGNLSSNVDDYSRF 454
>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 28.3 bits (60), Expect = 0.44
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Frame = +3
Query: 123 AWALGNIAGDGPETRDMILNAGIMQALVPLLNA---QTPTSQLRI-AVWTYSNLCRNKNP 290
A AL PETR LNA I L P LN P LR+ ++ L +N +P
Sbjct: 85 ALALLQCIASHPETRIHFLNAHITLFLYPFLNTLSKSKPFEYLRLTSLGVIGALVKNDSP 144
Query: 291 -LVQFDLVAPALPYISDLLE 347
++ F L +P ++E
Sbjct: 145 EVINFLLSTEIIPLCLRIME 164
>SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 332
Score = 26.6 bits (56), Expect = 1.4
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 126 WALGNIAGDGPETRDMILNAGIMQALVP 209
+A+G+I GD P D++ AG++ + P
Sbjct: 60 YAIGDIHGDFPNALDVLSAAGVVSPVFP 87
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 26.6 bits (56), Expect = 1.4
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -3
Query: 372 PRAHLDLIFPINQKCKVEPGLQDRIVLEGFCFCKGY 265
P H DL ++ C V LQ+ + F F KGY
Sbjct: 289 PLTHYDLETGLSSTCDVNCSLQNFANYQDFYFSKGY 324
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 25.0 bits (52), Expect = 4.1
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -3
Query: 351 IFPINQKCKVEPGLQDRIVLEGFC-FCK 271
+F + C V PGL+++I++ +C FCK
Sbjct: 998 VFLESFSCPV-PGLEEKIIMWSYCKFCK 1024
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 25.0 bits (52), Expect = 4.1
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Frame = +2
Query: 179 KCRNNAGLGATSKCTNSNQSTENSCLD----LQ*PLQKQKPSSTIRSCSP 316
K RNN G A + QS +NS + + P + KP+ + SP
Sbjct: 249 KTRNNTGYTAKAPIIKRGQSVDNSAQERKTFAKNPTKNSKPAGQVIPSSP 298
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 24.2 bits (50), Expect = 7.2
Identities = 16/58 (27%), Positives = 24/58 (41%)
Frame = +3
Query: 69 VPKLISLLGQGGVVGEQCAWALGNIAGDGPETRDMILNAGIMQALVPLLNAQTPTSQL 242
VP L SL+ + G AW + + +G ++ A +LN P SQL
Sbjct: 537 VPLLSSLVTNQTLFGSDTAWDVALLNQNGLRMESSFIHHEHPSAYAIVLNNAFPNSQL 594
>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 24.2 bits (50), Expect = 7.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 111 GEQCAWALGNIAGDGPETRDMILNA 185
G+ + A+G IAG G +T+ I NA
Sbjct: 179 GDHLSRAIGRIAGQGGKTKFAIENA 203
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 24.2 bits (50), Expect = 7.2
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = -2
Query: 166 LVSGPSPAMFPSAHAHCSPTTPP*PKRLISLG 71
++ GP P P A P PP P +S G
Sbjct: 757 IMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 23.8 bits (49), Expect = 9.5
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 225 TPTSQLRIAVWTYSNLCRNKNPLVQ 299
T SQ+ +A+ T S +CR+ +PLVQ
Sbjct: 487 TVLSQI-LALVTTSQVCRHPHPLVQ 510
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 23.8 bits (49), Expect = 9.5
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -2
Query: 127 HAHCSPTTPP*P 92
H HCSP T P P
Sbjct: 373 HGHCSPITTPTP 384
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,732,187
Number of Sequences: 5004
Number of extensions: 35608
Number of successful extensions: 100
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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