Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0151
         (389 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   1.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   3.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   5.0  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   6.6  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   6.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   8.7  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 275 QKQKPSSTIRSCSPGS 322
           +K KP+ST  + SPGS
Sbjct: 275 EKDKPNSTTMNGSPGS 290


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = +2

Query: 29  HPTTYHGCC*WWSC 70
           HP   HG C W  C
Sbjct: 275 HPLYGHGVCKWPGC 288


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 318 PGLQDRIVLEGFCFC 274
           PG Q   +L+  CFC
Sbjct: 473 PGPQVETILQNACFC 487


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 103 PP*PKRLISLGTAPP 59
           PP PK L+ L  +PP
Sbjct: 71  PPGPKDLVYLEPSPP 85


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 103 PP*PKRLISLGTAPP 59
           PP PK L+ L  +PP
Sbjct: 72  PPGPKDLVYLEPSPP 86


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +3

Query: 105 VVGEQCAW 128
           V GEQC W
Sbjct: 600 VAGEQCCW 607


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,668
Number of Sequences: 438
Number of extensions: 2859
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)