Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0149
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    27   2.9  
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    26   3.8  
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb...    26   3.8  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    26   3.8  
SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz...    26   5.1  
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    25   6.7  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   6.7  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    25   8.8  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   8.8  

>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -1

Query: 309 VTSSSFVSFSHICALSQILNS**TTVITHLNLK-KH*IDKIKQ 184
           VT  SF  FSHI A+    N      I  LN+K KH  D + +
Sbjct: 112 VTMKSFTRFSHIVAIRSTGNCFSWDTIERLNIKPKHWRDLVNE 154


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 588 NPYKNRQSKTFFFNRFYDLVAKTF 517
           +PY N+ S + F+ R ++ + KTF
Sbjct: 329 SPYSNKVSSSDFYTRSFEEIEKTF 352


>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 240

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 304 VQQLCFIFPHLCTFTDIK-QLINHRYYTFKPE 212
           +QQ+C +F H  T  D + Q++   Y+   PE
Sbjct: 161 LQQICVVFKHKQTSQDTRFQILEFFYFYLSPE 192


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -3

Query: 301 QQLCFIFPHLCTFTDIKQLINHRYYTFKPEETLN-RQNKTNYTTSLL 164
           QQL  IFP +  F ++   + + Y     ++ L  R N  +  TSLL
Sbjct: 489 QQLIDIFPTILRFLEMPSFVVYTYAAIALDQLLTVRHNHVHIFTSLL 535


>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 322

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -3

Query: 238 HRYYTFKPEETLNRQNKTNYTTSLLQKVPIQDKHIAGSLCN 116
           H Y+   P  +L +QN T   +  LQ++ IQ       L N
Sbjct: 84  HEYFCVYPNASLIKQNSTTEPSYDLQELRIQGTEKINELAN 124


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 263 ESAQMWENETKLLDVTSRVPPKSPLKK 343
           ES +  ENE   +DVT  VPP   L +
Sbjct: 25  ESEKEGENEVLEIDVTKPVPPSKKLMR 51


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -2

Query: 356  SFTEIFSVDFLEEPEKLRPAALFHFP 279
            SF  IFS  F EEPE  +    F  P
Sbjct: 1836 SFDNIFSYIFSEEPESKKSPIWFELP 1861


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 48  VIKSPKKKKNRIANFIKATKLLQ 116
           V+KS KK    I+NF++ TK ++
Sbjct: 77  VVKSRKKGSENISNFMEKTKAIK 99


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -1

Query: 576 NRQSKTFFFNRFYDLVAKTFKSCLILLYILNFMKNDNME*NE 451
           N +S+T + +  YD    + +S  +LL  LN +KN++ + NE
Sbjct: 676 NSESETLY-HLIYDRYRVSLESARLLLGPLNELKNESNKINE 716


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,452,423
Number of Sequences: 5004
Number of extensions: 48105
Number of successful extensions: 150
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)