Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0148
(667 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z30423-2|CAA83004.1| 468|Caenorhabditis elegans Hypothetical pr... 261 3e-70
AC024799-5|AAO25979.1| 474|Caenorhabditis elegans Hypothetical ... 31 0.73
AC024799-4|AAK72318.1| 536|Caenorhabditis elegans Hypothetical ... 31 0.73
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 31 0.97
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 30 1.3
AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical ... 29 3.0
Z68318-4|CAA92693.2| 1170|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z69787-10|CAH65466.1| 398|Caenorhabditis elegans Hypothetical p... 28 5.2
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 28 5.2
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 28 5.2
AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein. 28 5.2
U00031-9|AAK18871.1| 470|Caenorhabditis elegans Hypothetical pr... 28 6.8
U37429-15|AAN63412.1| 195|Caenorhabditis elegans Peroxiredoxin ... 27 9.1
AL117202-16|CAD91710.1| 121|Caenorhabditis elegans Hypothetical... 27 9.1
AF025460-5|AAB70988.5| 584|Caenorhabditis elegans Polh (dna pol... 27 9.1
AB244413-1|BAE72703.1| 584|Caenorhabditis elegans DNA polymeras... 27 9.1
>Z30423-2|CAA83004.1| 468|Caenorhabditis elegans Hypothetical
protein T20G5.2 protein.
Length = 468
Score = 261 bits (640), Expect = 3e-70
Identities = 122/207 (58%), Positives = 156/207 (75%), Gaps = 1/207 (0%)
Frame = +1
Query: 49 MALFRITSSRLVELQKACPTATVLLRGLSAE-QTNLKSILQEKIPKEQEKIREFRKKHGS 225
MA+ R+ + ++ + + P +T SAE TNLK +L +KIP K++ FR +HGS
Sbjct: 6 MAIRRLITKGVIPVCQVAPLST------SAEGSTNLKEVLSKKIPAHNAKVKSFRTEHGS 59
Query: 226 TKVGEVTVDMMYGGMRGIKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPE 405
T V V +DM+YGGMR +KG+V ETSVLD +EGIRFRG SIPECQ+ LPKAKGGEEPLPE
Sbjct: 60 TVVQNVNIDMIYGGMRSMKGMVTETSVLDPEEGIRFRGYSIPECQKLLPKAKGGEEPLPE 119
Query: 406 GLFWLLVTGDIPTEAQAKALSKEWAARAELPAHVVTMLNNMPGKLHPMSQFSAAVTALNS 585
++WLL TGD+P+EAQ A++KEW ARA+LP HVV ML+N P LHPM+QF AA+ ALN+
Sbjct: 120 AIWWLLCTGDVPSEAQTAAITKEWNARADLPTHVVRMLDNFPDNLHPMAQFIAAIAALNN 179
Query: 586 ESKFAKAYSEGVHKSKYWEYVYEDTMN 666
ESKFA AY+ GV K+ YWEY YED+M+
Sbjct: 180 ESKFAGAYARGVAKASYWEYAYEDSMD 206
>AC024799-5|AAO25979.1| 474|Caenorhabditis elegans Hypothetical
protein Y49C4A.8b protein.
Length = 474
Score = 31.1 bits (67), Expect = 0.73
Identities = 18/55 (32%), Positives = 31/55 (56%)
Frame = +1
Query: 52 ALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKK 216
++F I S+ + + TV + G+S NLK I ++K+ K+ E++ E RKK
Sbjct: 251 SIFFINSNPFFDFPRPVLQKTVPIGGISV---NLKWIKEQKLTKDWEEVLEMRKK 302
>AC024799-4|AAK72318.1| 536|Caenorhabditis elegans Hypothetical
protein Y49C4A.8a protein.
Length = 536
Score = 31.1 bits (67), Expect = 0.73
Identities = 18/55 (32%), Positives = 31/55 (56%)
Frame = +1
Query: 52 ALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKK 216
++F I S+ + + TV + G+S NLK I ++K+ K+ E++ E RKK
Sbjct: 251 SIFFINSNPFFDFPRPVLQKTVPIGGISV---NLKWIKEQKLTKDWEEVLEMRKK 302
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 30.7 bits (66), Expect = 0.97
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 103 PTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGE 240
PT+T+ L L + NL S+ E+ K +EKI + R++ + + E
Sbjct: 2424 PTSTIDLNMLQGIEDNLNSLPAEESDKIREKINDLRRRKQESDLAE 2469
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 103 PTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKK 216
PT+T+ L L + NL S+ E+ K +EKI + R++
Sbjct: 2482 PTSTIDLNMLQGIEDNLNSLPAEESDKIREKINDLRRR 2519
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -3
Query: 338 PRKRIPSSASSTEVSQTRPLIPRMPPYIISTVTSPTLVEP 219
P + P ST Q RP PR PY+ + T+ +EP
Sbjct: 226 PARPAPYIEPSTAKPQPRPQPPRTRPYVAPSTTTQRYIEP 265
>AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical
protein Y87G2A.5 protein.
Length = 1050
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +1
Query: 376 AKGGEEPLPEGLFWLLVTGDIPTEAQAKALSKEWAARAEL 495
A G E+PLPE +W V+ EA AKA K AE+
Sbjct: 521 ADGREQPLPEENYW--VSARTEQEALAKAAQKFQVPEAEI 558
>Z68318-4|CAA92693.2| 1170|Caenorhabditis elegans Hypothetical
protein T21B10.3 protein.
Length = 1170
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -3
Query: 365 CCWHSG-MDRPRKRIPSSASSTEVSQTRPLIPRMPPYIISTVTSPTLVEPCFFRN 204
C W S + P+K++PS T Q ++ P +STV+ C+FR+
Sbjct: 585 CSWFSSSLQNPKKQVPSGVYKTIAEQHLDEFEQIKPEEVSTVSD------CYFRS 633
>Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical protein
T10G3.5b protein.
Length = 1203
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/69 (23%), Positives = 35/69 (50%)
Frame = +1
Query: 52 ALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTK 231
+L ++ SR+ EL+ ++ L A+ +++I QEK+ + Q+ EF + +
Sbjct: 1019 SLEKVNHSRIEELESRLTQRERVVESLEADLAAVRNIEQEKLDELQKLKEEFDELKKAET 1078
Query: 232 VGEVTVDMM 258
+ + DM+
Sbjct: 1079 MWQAEKDML 1087
>Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical protein
T10G3.5a protein.
Length = 1205
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/69 (23%), Positives = 35/69 (50%)
Frame = +1
Query: 52 ALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTK 231
+L ++ SR+ EL+ ++ L A+ +++I QEK+ + Q+ EF + +
Sbjct: 1021 SLEKVNHSRIEELESRLTQRERVVESLEADLAAVRNIEQEKLDELQKLKEEFDELKKAET 1080
Query: 232 VGEVTVDMM 258
+ + DM+
Sbjct: 1081 MWQAEKDML 1089
>Z69787-10|CAH65466.1| 398|Caenorhabditis elegans Hypothetical
protein C44C10.11 protein.
Length = 398
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 130 LSAEQTNLKSILQEKIPKEQEKIREFRKKH 219
L+ E NLK L++K E + I E +KKH
Sbjct: 318 LTEENHNLKEQLKQKTDAETKMIAEMKKKH 347
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -3
Query: 293 QTRPLIPRMPPYIISTVTSPTLVEPCFFRNSR 198
QTRP P++PP I+ T V+P FF+ +R
Sbjct: 365 QTRP--PQLPPVQITQPPIQTPVQPIFFQTTR 394
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -3
Query: 293 QTRPLIPRMPPYIISTVTSPTLVEPCFFRNSR 198
QTRP P++PP I+ T V+P FF+ +R
Sbjct: 462 QTRP--PQLPPVQITQPPIQTPVQPIFFQTTR 491
>AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.
Length = 1205
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/69 (23%), Positives = 35/69 (50%)
Frame = +1
Query: 52 ALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTK 231
+L ++ SR+ EL+ ++ L A+ +++I QEK+ + Q+ EF + +
Sbjct: 1021 SLEKVNHSRIEELESRLTQRERVVESLEADLAAVRNIEQEKLDELQKLKEEFDELKKAET 1080
Query: 232 VGEVTVDMM 258
+ + DM+
Sbjct: 1081 MWQAEKDML 1089
>U00031-9|AAK18871.1| 470|Caenorhabditis elegans Hypothetical
protein B0361.8 protein.
Length = 470
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 140 SALRPRSRTVAVGHAFCNSTSLEDVILNRAIFKAAERKLP-HK 15
S R +S+TVA H +CN+ + +L AI + ++K P HK
Sbjct: 34 SGFRRKSKTVAFFHPYCNAGGGGERVLWAAI-RTMQKKFPDHK 75
>U37429-15|AAN63412.1| 195|Caenorhabditis elegans Peroxiredoxin
protein 2 protein.
Length = 195
Score = 27.5 bits (58), Expect = 9.1
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +1
Query: 211 KKHGSTKVGEVTVDMMYGGMRGIKGLVWETSVLDADEGIRFRGLSIPECQQQL 369
+KHG +GE+ + ++ I + VL DEGI FRGL I + Q L
Sbjct: 89 RKHGG--LGEMNIPVLADTNHQISR---DYGVLKEDEGIAFRGLFIIDPSQNL 136
>AL117202-16|CAD91710.1| 121|Caenorhabditis elegans Hypothetical
protein Y47D3A.20 protein.
Length = 121
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 398 YPKVFSGFSSLAIYPPKRKLK 460
+P++F GFSS+ +PP K K
Sbjct: 30 FPRLFKGFSSIFHFPPLNKPK 50
>AF025460-5|AAB70988.5| 584|Caenorhabditis elegans Polh (dna
polymerase eta) homologprotein 1 protein.
Length = 584
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -3
Query: 194 FSCSLGIFSWRILFKFVCSALRPRSRTV 111
F CS G+ + +++ K VC+ +PR +T+
Sbjct: 209 FFCSAGVGNNKMMAKLVCARHKPRQQTL 236
>AB244413-1|BAE72703.1| 584|Caenorhabditis elegans DNA polymerase
eta protein.
Length = 584
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -3
Query: 194 FSCSLGIFSWRILFKFVCSALRPRSRTV 111
F CS G+ + +++ K VC+ +PR +T+
Sbjct: 209 FFCSAGVGNNKMMAKLVCARHKPRQQTL 236
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.130 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,893,563
Number of Sequences: 27780
Number of extensions: 299368
Number of successful extensions: 1069
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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