Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0146
(741 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP22H7.06 |||nicotinamide riboside kinase |Schizosaccharomyces... 35 0.014
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 30 0.40
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 28 1.6
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom... 27 3.7
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 3.7
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 27 3.7
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|... 27 3.7
SPAC30.02c |||RNA polymerase II elongator complex subunit|Schizo... 27 3.7
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 26 4.9
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.6
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 25 8.6
>SPBP22H7.06 |||nicotinamide riboside kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 230
Score = 34.7 bits (76), Expect = 0.014
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 606 IIIGISGVTCGGKTTLANKLKNALTPVYVFHQDKYFYPD 722
II+G+SG +C GK+TL L + H+D ++ D
Sbjct: 6 IIVGVSGASCSGKSTLCQLLHAIFEGSSLVHEDDFYKTD 44
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 29.9 bits (64), Expect = 0.40
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +1
Query: 268 IKKLL-VLSEPAADPNIVEKIIQRAKKQKPLLE-NTEVKKDSAVYELIPNPKWFLLFCAV 441
+KK+L +L N+V K++ + L E N K DS + P KWFL A
Sbjct: 2363 VKKILDLLKVNQGLSNLVTKLLCSFENYVSLAEWNPRSKVDSTSFSRFPGYKWFLKDAAN 2422
Query: 442 WGL 450
+GL
Sbjct: 2423 YGL 2425
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 250 NKVDQNIKKLLVLSEPAADPNIVEKIIQRAKKQKPLLENTEV 375
NK+D + ++L P PN + +I+Q +K L EN +
Sbjct: 116 NKLDLTLVQILKQEWPHNWPNFIPEIVQASKTNLSLCENNMI 157
>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +1
Query: 259 DQNIKKLLVLSEPAADPNIVEKIIQRAKKQKPLLENTEVKKDSAVYE 399
D N+K+ E ++ N+ E +++R KK P+L + V E
Sbjct: 385 DHNVKRYGKSEESSSTMNVGEGLLKRTKKYIPILSRQRQESVEVVNE 431
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Frame = +3
Query: 513 SHKK-SIQYRTTNFVPPSANLS 575
SH+K + YRTT+F+P S +LS
Sbjct: 240 SHEKLDLPYRTTDFIPYSKDLS 261
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 26.6 bits (56), Expect = 3.7
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +3
Query: 507 DLSHKKSIQYRTTNFVPPSANLSQNSNMPGKDWIIIGISGVTCGGKTTLANKLKNALTPV 686
DLS ++ + N V PS NLS NS+ + V+ + + + +NALTP+
Sbjct: 144 DLSINRNTNKKALNAVSPSLNLSSNSS----------VQDVSIDKEEMMKKQSRNALTPL 193
>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 277
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 609 IIGISGVTCGGKTTLANKLKNALT 680
I+GISG GK+TLA+ L LT
Sbjct: 27 ILGISGPQGSGKSTLASALDTELT 50
>SPAC30.02c |||RNA polymerase II elongator complex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 281
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 609 IIGISGVTCGGKTTLANKLKNAL 677
+I +SG GKTT +N+LK AL
Sbjct: 3 LIIVSGYPSSGKTTRSNELKKAL 25
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 602 LDHNRHFRGHLWRKNDPRQ*VKECPNTS 685
+D R FR LW+K ++ V +C N S
Sbjct: 342 VDDYRKFREDLWKKRHGKRKVYQCSNCS 369
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1379
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +1
Query: 286 LSEPAADPNIVEKIIQRAKKQKPLLENTEVKKDSAVYELI 405
LS A P+I Q + PL +N SA+Y+ +
Sbjct: 24 LSRRAVSPSISRSFFQHSNGSFPLFQNHRKSLPSAIYKSV 63
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/36 (27%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +2
Query: 155 KSVVRNVRGLQVKQFLIHTKVEVKKRT--TQLMIIK 256
K +VRN + ++ ++ H K+++ K T +++ I+K
Sbjct: 286 KLIVRNEESIDIRSYVFHKKIQLIKVTISSEMNILK 321
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,084,413
Number of Sequences: 5004
Number of extensions: 64778
Number of successful extensions: 145
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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