Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0146
(741 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1359 + 26382605-26382815,26382907-26382998,26383722-263837... 30 1.7
02_05_0622 + 30437533-30437577,30437694-30438177,30438301-304383... 30 1.7
04_03_0153 + 11919769-11919880,11920190-11920488,11921909-119220... 30 2.2
01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678 30 2.2
08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034 29 2.9
01_06_1478 - 37648781-37649113,37649200-37649455,37649954-376500... 29 2.9
08_02_0162 + 13464698-13464974,13465719-13465837,13465920-134665... 29 3.9
05_06_0020 + 24976990-24977167,24978763-24978874,24979634-249797... 29 3.9
03_03_0149 + 14843880-14844145,14846501-14846561,14846608-148467... 29 3.9
06_01_0400 + 2862684-2862872,2862956-2863170,2863298-2863448,286... 29 5.1
04_04_0063 - 22441549-22442961 29 5.1
02_05_0469 + 29297209-29297527,29297847-29297961,29298060-292982... 28 6.8
09_02_0181 - 5425833-5426527,5426667-5429397 28 9.0
>08_02_1359 +
26382605-26382815,26382907-26382998,26383722-26383791,
26383895-26384013,26384580-26384676,26384781-26384860,
26384986-26385180,26385460-26385520,26386408-26386468,
26386900-26386993,26387085-26387157,26387158-26387270,
26387444-26387587
Length = 469
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 555 PPSANLSQNSNMPGKDWIIIGISGVTCGGKTTLANKLKNALTP--VYVFHQDKYF 713
PP + + + K +IG+SG T GKTT+ + + L V + +QD ++
Sbjct: 51 PPPPSAAAAAEEGSKQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFY 105
>02_05_0622 +
30437533-30437577,30437694-30438177,30438301-30438354,
30438565-30438789,30438891-30438943,30439591-30439714,
30439823-30440077,30440171-30440517,30440661-30441266,
30441504-30441546,30441624-30441757
Length = 789
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = -3
Query: 565 ADGGTKFVVRY*IDFLWLRSINKGKCGTG*RTLGPL*RTVPKQRRIVETTLDLGSIHKQQ 386
A G+ F+ R I+F + + + G P T+ K +V+TT LG +H+Q+
Sbjct: 692 AKSGSSFIKRIVINFFY-EFLRRNSRGPSYAATIPHASTLEKPFAVVDTTAKLGKLHRQR 750
Query: 385 NLFSLL 368
+L
Sbjct: 751 EALRVL 756
>04_03_0153 +
11919769-11919880,11920190-11920488,11921909-11922024,
11922113-11922248,11922959-11923006,11924130-11924228,
11924317-11924385,11924465-11924599,11924687-11924755,
11925221-11925276,11925465-11925624,11926534-11926698,
11927484-11927568,11927646-11927849,11928396-11928487,
11928571-11928613,11930727-11930884,11931520-11931630,
11931947-11932012,11933716-11933784,11934181-11934255,
11934330-11934506,11934598-11934683,11936259-11936313,
11936901-11936939,11938105-11938230,11938319-11938432,
11939208-11939265,11939485-11939623,11939698-11939783,
11939842-11940041
Length = 1148
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 606 IIIGISGVTCGGKTTLANKLKNALTPVYVFHQDKYFYPD 722
+I+GI G + GKT+LA K+ N + V + Y+ P+
Sbjct: 625 VIVGIGGPSGSGKTSLAQKMAN-IIGCEVISLESYYKPE 662
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 606 IIIGISGVTCGGKTTLANKLKNALTPVYVFHQDKY 710
+ +GI G T GKT+LA K+ + L V + + Y
Sbjct: 162 VTVGIGGPTGSGKTSLAEKVASVLGCVVIVSMEDY 196
>01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678
Length = 261
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 420 PLWIWDQFINSRIFFHFCVLK*RFLLFSPLY 328
P+W W F +F H VL RF+ PLY
Sbjct: 68 PVWSWIMFSPFLLFIHLFVLLRRFVKNEPLY 98
>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
Length = 930
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 591 PGKDWIIIGISGVTCGGKTTLANKLKNALTPVY 689
P K +++ I G+ GKTTLAN++ + L P +
Sbjct: 187 PSKKLVVVSIVGLGGLGKTTLANQVYHHLKPEF 219
>01_06_1478 -
37648781-37649113,37649200-37649455,37649954-37650066,
37650312-37650689,37650822-37650999,37651429-37651565,
37651993-37652155,37652531-37652688,37652819-37652923,
37653106-37653253,37653816-37654132
Length = 761
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +1
Query: 259 DQNIKKLLVLSEP--AADPNIVEKIIQRAKKQKPLLENTEVKKDSAVYELIPN 411
+ ++K ++LS+ AD N+VEK + K++ ++E T+ +A E IP+
Sbjct: 470 NSSVKHGVILSKSLVVADKNLVEKAMVACKEKSKIVERTQATIVAATIEGIPS 522
>08_02_0162 +
13464698-13464974,13465719-13465837,13465920-13466579,
13466686-13466763,13466849-13466938,13467241-13467378,
13467730-13467738
Length = 456
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 679 VRAFFNLLARVVFPPQVTPEMPIMIQSLPGI 587
++A F+ + +V PP V P MP+ +PG+
Sbjct: 407 LQAQFSQMRPMVMPPSVAPRMPMYPPGVPGV 437
>05_06_0020 + 24976990-24977167,24978763-24978874,24979634-24979722,
24979801-24979869,24979953-24980082,24980506-24980664,
24980767-24981127,24981343-24981452,24981753-24981909,
24983336-24983748,24983828-24984020,24984384-24986198
Length = 1261
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 572 EPKFKYAWQRLDHNRHFRGHLWRKNDPRQ 658
+P+ + +WQ + NRH HLWR + Q
Sbjct: 1022 KPEARDSWQPWNANRHVDKHLWRDDSTYQ 1050
>03_03_0149 +
14843880-14844145,14846501-14846561,14846608-14846720,
14848448-14848540,14849578-14849793,14853773-14856023
Length = 999
Score = 29.1 bits (62), Expect = 3.9
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +3
Query: 555 PPSANLSQNSNMPGKDWIIIGISGVTCGGKTTLANKLKNALTPVYVF--HQDKYFYPD-D 725
P L +N N P I++ +SG + GKTTL + N + F H + F P
Sbjct: 274 PTDQELQKNDNRP----IVVSVSGKSGVGKTTLVRNVYNIMKKKNCFDVHAMESFAPHLT 329
Query: 726 SPNTL 740
+PN L
Sbjct: 330 APNIL 334
>06_01_0400 +
2862684-2862872,2862956-2863170,2863298-2863448,
2863566-2863757,2864471-2864633,2864754-2864989,
2865446-2865622,2865707-2865826,2865939-2866241
Length = 581
Score = 28.7 bits (61), Expect = 5.1
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = +3
Query: 537 RTTNFVPPSANLSQNSNMPGKDWIIIGISGVTCGGKTTLANKLKNALTPVY 689
R VP SANL Q+ G ++IG GV GKTT+ ++ L Y
Sbjct: 98 RVGRAVPGSANLLQDLVKDGGSLLLIGPPGV---GKTTVIREIARMLADDY 145
>04_04_0063 - 22441549-22442961
Length = 470
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/48 (25%), Positives = 27/48 (56%)
Frame = +1
Query: 259 DQNIKKLLVLSEPAADPNIVEKIIQRAKKQKPLLENTEVKKDSAVYEL 402
D+N + +L + A+ N+V++ ++ A+ + L + +KD A+ L
Sbjct: 235 DENARLRDILKQAVAEANVVKESLELARGENARLNDVVAEKDGALQSL 282
>02_05_0469 +
29297209-29297527,29297847-29297961,29298060-29298255,
29298427-29298540,29298695-29298868,29299326-29299520,
29299666-29299788,29299892-29300004,29300117-29300237,
29300363-29300623,29301712-29301921
Length = 646
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 606 IIIGISGVTCGGKTTLANKLKNALTPVYVFHQDKY 710
I +G++G + GKT K+ N + V V D Y
Sbjct: 60 IFVGVAGPSGAGKTVFTEKVLNFMPGVAVISMDNY 94
>09_02_0181 - 5425833-5426527,5426667-5429397
Length = 1141
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +3
Query: 609 IIGISGVTCGGKTTLANKLKNALTPVYVFHQDKY 710
IIGI GV GKT L NK+ N+ FH Y
Sbjct: 172 IIGIWGVGGVGKTHLLNKINNSFLGDSSFHSIIY 205
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,737,854
Number of Sequences: 37544
Number of extensions: 375070
Number of successful extensions: 952
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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