Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0146
         (741 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51990| Best HMM Match : Guanylate_cyc (HMM E-Value=0)               34   0.14 
SB_28936| Best HMM Match : PAPA-1 (HMM E-Value=8.6)                    29   4.0  
SB_11808| Best HMM Match : Glycos_transf_1 (HMM E-Value=0.0021)        29   4.0  
SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_11830| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_51990| Best HMM Match : Guanylate_cyc (HMM E-Value=0)
          Length = 1055

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
 Frame = -1

Query: 405 DQFINSRIFFHFCVLK*RFLLFSPLYNFFNNIGICCRFGKN*QLFYILVNFIIISCVVRF 226
           D  +++ +FF  CVL   FLLF+P+   F+N   C +   N    +   ++I+   ++ F
Sbjct: 685 DVLLSNIVFFTICVLC--FLLFNPVSLIFSNFMDCSQLADNNARNFF--SYIVAVALLHF 740

Query: 225 --FTSTFVWMRNCL 190
             FT    WM+  L
Sbjct: 741 CNFTQLTSWMKTSL 754


>SB_28936| Best HMM Match : PAPA-1 (HMM E-Value=8.6)
          Length = 339

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 551 CSTISKFEPKFKYAWQRLDHNRHFRGHLWRKND 649
           C  +   + K +Y W+R D+ +HF    WRK +
Sbjct: 230 CLVVRSPKNKLRYPWERKDYLKHFE---WRKKE 259


>SB_11808| Best HMM Match : Glycos_transf_1 (HMM E-Value=0.0021)
          Length = 496

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 262 QNIKKLLVLSEPAADPNIVEKIIQRAKKQKPLLENTE 372
           + I K +V+  P  DPN+ E      K+QK  LEN +
Sbjct: 205 EGILKKIVIIPPGLDPNVFEIGEDFDKRQKAFLENVQ 241


>SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 310 WDLLQVRKELATFLYSGQLYYH 245
           WD+ QVR+EL   +Y   L+ H
Sbjct: 202 WDIKQVREELGAQVYHNMLFIH 223


>SB_11830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 271

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 270 YILVNFIIISCVVRFFTSTFVWMR 199
           Y++  F +IS    FF + FVW+R
Sbjct: 39  YLIAQFFLISQSFLFFVARFVWLR 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,968,731
Number of Sequences: 59808
Number of extensions: 446373
Number of successful extensions: 993
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)