Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0144
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    27   1.6  
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    27   2.2  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   3.8  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    26   5.0  
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    26   5.0  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    26   5.0  
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   6.6  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    25   6.6  

>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +1

Query: 193 DLRADVNRLVLHSNLINLEVIID 261
           D  AD+ R+++HSNL+N E +++
Sbjct: 628 DKPADIKRVIVHSNLLNPEWLMN 650


>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +2

Query: 29  YHTNF*LKCGCVADFKCVVYWFWLYKIPIFRQFLSNLI 142
           Y   +  KC  VA       WFW + I  F  F+SN I
Sbjct: 397 YPIRYRSKCAAVATAS---NWFWNFMISFFTPFISNSI 431


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 176 LEDCIFLFSTKILSLKEIV 120
           L+DCIFLF   +L +K ++
Sbjct: 536 LKDCIFLFKNTLLGIKPVL 554


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 124  LSEDRYFIKPKPIHDTLKICNATTFQLK 41
            L++D+ FI   P+      CNAT+F L+
Sbjct: 1240 LTDDQCFINVSPLLLKCPSCNATSFSLR 1267


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 18/70 (25%), Positives = 32/70 (45%)
 Frame = -1

Query: 344 TNAMSGSSYKRNIREIRSPDSFLSSCSMSIITSKFIRLLCNTRRLTSARRSITGPGLEDC 165
           TN+     YK+++ E+ S  +FL   +     +   RL  +  RL    +++     +D 
Sbjct: 22  TNSSRYPFYKKHLLELNSESTFLGLLTKGQADTSITRLNQDDVRLFEKAKTV-ADRTKDV 80

Query: 164 IFLFSTKILS 135
            + FS  ILS
Sbjct: 81  AYSFSDPILS 90


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 604 FPRIFCKVTFLQDLYVCSLCNCLFGS 527
           +P+ F +V  +   Y+CS C C +GS
Sbjct: 202 YPKEFSEVDIV---YICSFCFCYYGS 224


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 53  CGCVADFKCVVYWFW 97
           CG  +   C +YWFW
Sbjct: 341 CGGYSGTSCGIYWFW 355


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = -3

Query: 264 NVDNHFQVYKVAVQHKAVNISTKINNRSRTRRLHLFIQHKNIKFERNCLKIGIL*SQNQY 85
           NV    +V+ V + H  +N ST +   +R      F++ ++ K  R  +KIGI    N  
Sbjct: 206 NVKGVTKVFNV-LDHPDINDSTCLTKEAR-----YFVKEQHKKLSRKPIKIGIPIDWNVS 259

Query: 84  TTH 76
            TH
Sbjct: 260 ETH 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,583,324
Number of Sequences: 5004
Number of extensions: 52764
Number of successful extensions: 171
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)