Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0144
         (617 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384...    30   1.7  
10_07_0098 - 12844631-12845074,12845329-12846570                       28   5.2  
06_01_0922 - 7113781-7113942,7114093-7114235,7115305-7115506,711...    28   6.8  
05_01_0315 - 2468267-2468293,2469021-2469070,2469159-2469234,246...    28   6.8  
06_01_0275 + 2029542-2029689,2029777-2030295,2030657-2030754,203...    27   9.0  

>03_02_0740 - 10836752-10837052,10837756-10837814,10837901-10838476,
            10839965-10841686,10841776-10842173,10842264-10842318,
            10842989-10843048,10843444-10843540,10844885-10844955,
            10845029-10845109,10846054-10846124,10847951-10848119,
            10848521-10848683,10848752-10848942,10849037-10849168
          Length = 1381

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 385  EHSLLQDWLLKAKCKLTWKHELVEG 459
            E S+ ++W  + KCK+ W++EL EG
Sbjct: 1156 EASIDRNWTNRDKCKVWWRNELEEG 1180


>10_07_0098 - 12844631-12845074,12845329-12846570
          Length = 561

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +1

Query: 289 GDLISLMFLL--YDDPDIALVKLTAYQQSSNAYHEHSLLQDWLL 414
           GD     FLL     P ++L+K T  +   N YH++ ++QD L+
Sbjct: 354 GDQFWFRFLLGWLMPPKVSLLKATQGESIRNYYHDNHVIQDMLV 397


>06_01_0922 -
           7113781-7113942,7114093-7114235,7115305-7115506,
           7115590-7115685,7117053-7117139,7117237-7117638
          Length = 363

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 151 LNKKMQSSSPGPVIDLRADVNRLVLHSNLI-NLEVIIDIEHELRKES 288
           L  KM+ SS  P++DL+ +  R +     I  +E+I+ +E + R  S
Sbjct: 179 LAAKMEESSAPPLLDLQIEGTRFIFEPRTIQRMELIVLVELDWRLRS 225


>05_01_0315 -
           2468267-2468293,2469021-2469070,2469159-2469234,
           2469498-2469575,2469967-2470048,2470146-2470238,
           2470564-2470673,2470831-2470893,2471293-2471344,
           2471421-2471545,2472681-2472794,2472917-2472961,
           2473278-2473337,2474725-2474778,2474944-2474992,
           2475071-2475252,2475349-2475404,2475491-2475584
          Length = 469

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 4   ITVWFDNNLSYKFLIEMWLRCRF*VCRVLVLAL*NTY 114
           + VW D  L +K +   WL C F V  +LV +L N +
Sbjct: 358 VAVWHD--LEWKLISWAWLTCLFFVPEILVKSLSNKF 392


>06_01_0275 +
           2029542-2029689,2029777-2030295,2030657-2030754,
           2031718-2032028,2032560-2032631,2032729-2033398
          Length = 605

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -2

Query: 610 HSFPRIFCKVTFLQDLYVCSLCNCLFGS 527
           H F R FC V+FL +      CN LFGS
Sbjct: 317 HDFVRPFCTVSFLSE------CNILFGS 338


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,141,061
Number of Sequences: 37544
Number of extensions: 286799
Number of successful extensions: 650
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)