Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0144
         (617 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21683| Best HMM Match : Fe_dep_repress (HMM E-Value=4)              29   3.0  
SB_41787| Best HMM Match : Frizzled (HMM E-Value=0)                    29   4.0  
SB_7216| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.0  
SB_45045| Best HMM Match : Kinesin (HMM E-Value=0)                     27   9.2  
SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             27   9.2  

>SB_21683| Best HMM Match : Fe_dep_repress (HMM E-Value=4)
          Length = 268

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/81 (24%), Positives = 39/81 (48%)
 Frame = +1

Query: 229 SNLINLEVIIDIEHELRKESGDLISLMFLLYDDPDIALVKLTAYQQSSNAYHEHSLLQDW 408
           + +I   V  D EH+L KE  + +  +F + D+ +   VKL   Q   +       L   
Sbjct: 60  TTIIASPVPADKEHDLPKEFTNYMRALFGILDEHNTGYVKLADIQSYLDVKEGQGGLPAG 119

Query: 409 LLKAKCKLTWKHELVEGLLIC 471
           +L++  K+T ++ L++   +C
Sbjct: 120 ILESLYKVTPRNGLLDFESLC 140


>SB_41787| Best HMM Match : Frizzled (HMM E-Value=0)
          Length = 542

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +1

Query: 298 ISLMFLLYDDPDIALVKLTAYQQSSNAYHEHSLLQDWLLKAKC 426
           I +  +LY  P + ++    Y+QS+    ++S ++ W  + KC
Sbjct: 426 IGVFSILYTVPALVVIGCLYYEQSNRELWDNSWIEGWKRQKKC 468


>SB_7216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1400

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 531 PNRQLHNEHTYKSCKKVTLQNMRGNE 608
           PN+ +H E TY + K V   N  GNE
Sbjct: 144 PNKVIHREDTYITKKNVFNSNSTGNE 169


>SB_45045| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 1260

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 438  PGQLTFCL*KPILKQGMLMICITRLLISC 352
            PG    CL  P+L+Q + ++ + + L+SC
Sbjct: 1048 PGPDKLCLSLPVLEQALNLLLVNKTLMSC 1076


>SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1120

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -2

Query: 595 IFCKVTFLQDLYVCSLCNCLF 533
           ++C+  F++D Y C +C C +
Sbjct: 495 MYCEFGFVKDQYGCEICKCAY 515


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,570,996
Number of Sequences: 59808
Number of extensions: 364816
Number of successful extensions: 820
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)