Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0144
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    25   0.59 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    24   1.4  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   3.2  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   4.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   7.3  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   7.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   7.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.6  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   9.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.6  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   9.6  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 469 KLTILRPIHVSRSAYILPLKANLEARNAHDMH 374
           ++  + PI+V   AYI  +K+N+      D+H
Sbjct: 32  EINSINPINVYTKAYIYTIKSNMAKTLQFDVH 63


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 184 PVIDLRADVNRLVLHSNLINLEVIID 261
           PV    AD +RLV  +  + L+VI+D
Sbjct: 94  PVYGTLADFDRLVRRAKSLGLKVILD 119


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +1

Query: 250 VIIDIEHELRKESGDLISLMFLLYDDPDIALVKLTAYQQ 366
           V+I   + L    G +I    L Y D    +V +  YQQ
Sbjct: 641 VVISSSNPLNVPYGPVIPEQSLTYQDQQYQVVSVEQYQQ 679


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 528 LPNRQLHNEHTYKSCKKVTLQNM 596
           L N+ +HN + YK+  K    N+
Sbjct: 318 LSNKTIHNNNNYKNYNKKLYYNI 340


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 381 ICITRLLISCQFY*CNVWIIVQ 316
           +CI   LI+ Q     VW+I++
Sbjct: 628 VCIAAALIALQIVLTLVWMIIE 649


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 90  GFGFIKYLSSDNFFQ 134
           GF  I Y +SDN FQ
Sbjct: 208 GFALIIYNNSDNSFQ 222


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 381 ICITRLLISCQFY*CNVWIIVQ 316
           +CI   LI+ Q     VW+I++
Sbjct: 718 VCIAAALIALQIVLTLVWMIIE 739


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 80  VVYWFWLYKIPIF 118
           V Y  W+Y +P+F
Sbjct: 218 VCYGIWVYFVPLF 230


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 528 LPNRQLHNEHTYK 566
           L NR +HN + YK
Sbjct: 85  LSNRTIHNNNNYK 97


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 571 QDLYVCSLCNCLFGS 527
           + +Y C+LC+  FGS
Sbjct: 257 EKVYKCTLCHETFGS 271


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 80  VVYWFWLYKIPIF 118
           V Y  W+Y +P+F
Sbjct: 94  VCYGIWVYFVPLF 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,280
Number of Sequences: 438
Number of extensions: 3680
Number of successful extensions: 18
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)