Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0144
         (617 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26020.1 68417.m03747 expressed protein weak similarity to ca...    29   3.3  
At3g19820.2 68416.m02511 cell elongation protein / DWARF1 / DIMI...    29   3.3  
At3g19820.1 68416.m02510 cell elongation protein / DWARF1 / DIMI...    29   3.3  
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ...    28   4.3  
At5g48600.1 68418.m06011 structural maintenance of chromosomes (...    27   10.0 
At5g13360.1 68418.m01539 auxin-responsive GH3 family protein sim...    27   10.0 
At4g36090.1 68417.m05137 oxidoreductase, 2OG-Fe(II) oxygenase fa...    27   10.0 
At1g48980.1 68414.m05491 hypothetical protein                          27   10.0 

>At4g26020.1 68417.m03747 expressed protein weak similarity to
           cardiac muscle factor 1 [Gallus gallus] GI:14422164
          Length = 247

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = -3

Query: 258 DNHFQVYKVAVQHKAVNISTKINNRSRTRRLHLFIQHKNIKFERNCLKIGIL*SQNQYTT 79
           D  ++ +K+ +    +N+    +N   +RR  L I +KN+K E   LK     S N +  
Sbjct: 17  DQIYEDFKIGLNE--INVYRSKSNVESSRREVLEISNKNLKEENERLKKLYTESLNNFAD 74

Query: 78  HLKSATQPH 52
            L+  T+ H
Sbjct: 75  QLEHRTKCH 83


>At3g19820.2 68416.m02511 cell elongation protein / DWARF1 /
           DIMINUTO (DIM) identical to GB:S71189 [SP|Q39085] from
           [Arabidopsis thaliana]; contains Pfam FAD binding domain
           PF01565
          Length = 561

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +1

Query: 328 PDIALVKLTAYQQSSNAYHEHSLLQDWLL---KAKCKLTWKHELVE 456
           P ++L+K T  +   N YH+  ++QD L+   K    L W H  +E
Sbjct: 369 PKVSLLKATQGEAIRNYYHDMHVIQDMLVPLYKVGDALEWVHREME 414


>At3g19820.1 68416.m02510 cell elongation protein / DWARF1 /
           DIMINUTO (DIM) identical to GB:S71189 [SP|Q39085] from
           [Arabidopsis thaliana]; contains Pfam FAD binding domain
           PF01565
          Length = 561

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +1

Query: 328 PDIALVKLTAYQQSSNAYHEHSLLQDWLL---KAKCKLTWKHELVE 456
           P ++L+K T  +   N YH+  ++QD L+   K    L W H  +E
Sbjct: 369 PKVSLLKATQGEAIRNYYHDMHVIQDMLVPLYKVGDALEWVHREME 414


>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
           protein / LIM domain-containing protein weak similarity
           to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
           [Mus musculus] GI:664955; contains Pfam profiles
           PF02809: Ubiquitin interaction motif, PF00412: LIM
           domain
          Length = 532

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -2

Query: 583 VTFLQDLYVCSLCNCLFG-SMFLSCLN 506
           +TF  D  +C+ CN   G   FL+CLN
Sbjct: 163 ITFQMDFRICAGCNMEIGHGRFLNCLN 189


>At5g48600.1 68418.m06011 structural maintenance of chromosomes (SMC)
            family protein similar to SP|P50532 Chromosome assembly
            protein XCAP-C {Xenopus laevis}; contains Pfam profiles
            PF02483: SMC family C-terminal domain, PF02463:
            RecF/RecN/SMC N terminal domain
          Length = 1241

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 487  IRKMGFDL-NSLKTYYQTDNCIMSIHINP 570
            +R   F+L + L   Y+TDNC  SI INP
Sbjct: 1202 LRNNMFELADRLVGIYKTDNCTKSITINP 1230


>At5g13360.1 68418.m01539 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 594

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 23/90 (25%), Positives = 41/90 (45%)
 Frame = +1

Query: 310 FLLYDDPDIALVKLTAYQQSSNAYHEHSLLQDWLLKAKCKLTWKHELVEGLLICKMNNLI 489
           FL   +P++A +     Q+ S    E  + + W  KAKC       +V G +  + N L+
Sbjct: 262 FLTAPNPELASL---IEQECSQTSWEAIVKRLWP-KAKCI----EAIVTGTM-AQYNPLL 312

Query: 490 RKMGFDLNSLKTYYQTDNCIMSIHINPVKK 579
                 L  + T+Y +  C   +++NP+ K
Sbjct: 313 EFYSGGLPVISTFYGSSECFFGLNLNPLSK 342


>At4g36090.1 68417.m05137 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to At2g17970, At2g17960; contains
           PF03171 2OG-Fe(II) oxygenase superfamily domain
          Length = 385

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -2

Query: 610 HSFPRIFCKVTFLQDLYVCSLCNCLFGS 527
           H F R FC V+FL +      CN LFGS
Sbjct: 343 HDFLRPFCTVSFLSE------CNILFGS 364


>At1g48980.1 68414.m05491 hypothetical protein
          Length = 264

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -2

Query: 610 HSFPRIFCKVTFLQDLYVCSLCNCLFGS 527
           H F R FC V+FL +      CN LFGS
Sbjct: 221 HDFLRPFCTVSFLSE------CNILFGS 242


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,032,771
Number of Sequences: 28952
Number of extensions: 259126
Number of successful extensions: 652
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)