Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0142
         (322 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    93   7e-21
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    61   4e-11
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    48   3e-07
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    41   4e-05
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    38   4e-04
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    33   0.008
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    31   0.033
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    30   0.100
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    28   0.40 
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   3.8  

>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1315

 Score = 93.5 bits (222), Expect = 7e-21
 Identities = 45/106 (42%), Positives = 65/106 (61%), Gaps = 2/106 (1%)
 Frame = +3

Query: 3    RGAVFARMSSDQKQQLIVEYQALGYYVGMCGDGANDCGALRAAHCGXXXXXXXXXXXXXF 182
            +  +FARMS  +K +L+  +Q L Y VG CGDGANDCGAL+AA  G             F
Sbjct: 984  KAQIFARMSPSEKNELVSCFQNLNYCVGFCGDGANDCGALKAADVGISLSEAEASVAAPF 1043

Query: 183  TAR--ELSAAPRLLREGRAALATSFGLFKFMVGYSLTEFFSVAFLY 314
            T++  E++    ++++GRAAL TSF  F++M  YS  +F +V+ LY
Sbjct: 1044 TSKWFEITCVLDVIKDGRAALVTSFSCFQYMALYSAIQFITVSILY 1089


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1096

 Score = 61.3 bits (142), Expect = 4e-11
 Identities = 38/103 (36%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
 Frame = +3

Query: 12   VFARMSSDQKQQLIVEYQALGYYVGMCGDGANDCGALRAAHCGXXXXXXXXXXXXXFTAR 191
            V ARMS   K   +   Q  G  VG CGDGANDC AL+ A  G             F ++
Sbjct: 810  VLARMSPFDKATYVELCQKYGCKVGFCGDGANDCIALKQADVGVSLSDSEACAAASFVSK 869

Query: 192  ELSAAP--RLLREGRAALATSFGLFKFMVGYSLTEFFSVAFLY 314
            + S      +L EGR +L  S   F++MV  ++ +F  V FLY
Sbjct: 870  KKSIKDVFNVLLEGRCSLILSHRCFQYMVLCAIVQFSGVFFLY 912


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 48.4 bits (110), Expect = 3e-07
 Identities = 22/43 (51%), Positives = 28/43 (65%)
 Frame = +3

Query: 12  VFARMSSDQKQQLIVEYQALGYYVGMCGDGANDCGALRAAHCG 140
           V+AR+S  QK+ +I   +  GY   MCGDG ND GAL+ AH G
Sbjct: 796 VYARVSPSQKEFMISTLKHNGYITLMCGDGTNDVGALKQAHVG 838


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 41.1 bits (92), Expect = 4e-05
 Identities = 20/46 (43%), Positives = 26/46 (56%)
 Frame = +3

Query: 3   RGAVFARMSSDQKQQLIVEYQALGYYVGMCGDGANDCGALRAAHCG 140
           R  VFAR +   K +++   Q+LG  V M GDG ND  AL+ A  G
Sbjct: 596 RVVVFARTTPQHKMKIVEALQSLGDVVAMTGDGVNDAPALKLADIG 641


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 37.9 bits (84), Expect = 4e-04
 Identities = 21/43 (48%), Positives = 24/43 (55%)
 Frame = +3

Query: 12  VFARMSSDQKQQLIVEYQALGYYVGMCGDGANDCGALRAAHCG 140
           V AR S   KQ LI   Q LG  V + GDG ND  AL+ A+ G
Sbjct: 853 VLARSSPLDKQLLIEGLQKLGNVVAVTGDGTNDAPALKKANVG 895


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 33.5 bits (73), Expect = 0.008
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 15  FARMSSDQKQQLIVEYQALGYYVGMCGDGANDCGALRAAHCG 140
           FA +    K  ++   Q  GY V M GDG ND  +L+ A  G
Sbjct: 693 FAEVFPQHKYAVVDILQQRGYLVAMTGDGVNDAPSLKKADAG 734


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 31.5 bits (68), Expect = 0.033
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 15  FARMSSDQKQQLIVEYQALGYYVGMCGDGANDCGALRAAHCG 140
           F  +    K  ++   Q  GY V M GDG ND  +L+ A  G
Sbjct: 605 FGEVFPQHKYAVVDILQQRGYLVAMTGDGVNDAPSLKKADTG 646


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 29.9 bits (64), Expect = 0.100
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 12  VFARMSSDQKQQLIVEYQALGYYVGMCGDGANDCGALRAAHCG 140
           V AR +   K ++I        +V M GDG ND  +L+ A+ G
Sbjct: 675 VIARCAPQTKVKMIEALHRRKAFVAMTGDGVNDSPSLKQANVG 717


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 27.9 bits (59), Expect = 0.40
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 3    RGAVFARMSSDQKQQLI-VEYQALGYYVGMCGDGANDCGALRAAHCG 140
            R  +  R+S  QK  ++ +  +  G  +   GDGAND   ++AAH G
Sbjct: 877  RAVICCRVSPLQKALIVKMVKRNTGEVLLAIGDGANDVPMIQAAHVG 923


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 93   GDGANDCGALRAAHCG 140
            GDGAND   ++ AH G
Sbjct: 1242 GDGANDIAMIQEAHVG 1257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 505,127
Number of Sequences: 5004
Number of extensions: 5328
Number of successful extensions: 28
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)