Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0142
         (322 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48726| Best HMM Match : E1-E2_ATPase (HMM E-Value=7.7e-07)          55   1e-08
SB_41088| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   2e-08
SB_54525| Best HMM Match : Ery_res_leader1 (HMM E-Value=5.4)           48   2e-06
SB_56051| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   6e-05
SB_43063| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.003
SB_227| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)                  37   0.003
SB_52615| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.007
SB_38048| Best HMM Match : CUB (HMM E-Value=1.4e-31)                   36   0.010
SB_42324| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.013
SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.013
SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)             32   0.12 
SB_21895| Best HMM Match : E1-E2_ATPase (HMM E-Value=0.008)            28   1.5  
SB_20525| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)                27   2.6  
SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.4  

>SB_48726| Best HMM Match : E1-E2_ATPase (HMM E-Value=7.7e-07)
          Length = 592

 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 30/67 (44%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
 Frame = +3

Query: 117 ALRAAHCGXXXXXXXXXXXXXFTARELSAAP-RLLREGRAALATSFGLFKFMVGYSLTEF 293
           AL+AA+ G             FT++ LS  P  L REGR AL TSF  FK+M  YS+ +F
Sbjct: 500 ALKAAYAGISLSEAEASIASPFTSKTLSLTPFDLAREGRCALVTSFACFKYMALYSIVQF 559

Query: 294 FSVAFLY 314
            SV  LY
Sbjct: 560 VSVLILY 566


>SB_41088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 23/43 (53%), Positives = 30/43 (69%)
 Frame = +3

Query: 12  VFARMSSDQKQQLIVEYQALGYYVGMCGDGANDCGALRAAHCG 140
           VFAR++  QK+ +I   ++ GY   MCGDG ND GAL+ AHCG
Sbjct: 444 VFARVAPKQKELVITRLKSRGYVTLMCGDGTNDVGALKHAHCG 486


>SB_54525| Best HMM Match : Ery_res_leader1 (HMM E-Value=5.4)
          Length = 157

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 19/40 (47%), Positives = 27/40 (67%)
 Frame = +3

Query: 195 LSAAPRLLREGRAALATSFGLFKFMVGYSLTEFFSVAFLY 314
           +   P++++EGR AL TSF  FK+M  YS+ +F SV  LY
Sbjct: 74  IECVPKVIKEGRCALVTSFACFKYMAMYSIVQFVSVLILY 113


>SB_56051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 42.7 bits (96), Expect = 6e-05
 Identities = 17/31 (54%), Positives = 21/31 (67%)
 Frame = +3

Query: 48  LIVEYQALGYYVGMCGDGANDCGALRAAHCG 140
           +I   ++ GY   MCGDG ND GAL+ AHCG
Sbjct: 3   VITRLKSRGYVTLMCGDGTNDVGALKHAHCG 33


>SB_43063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 19/43 (44%), Positives = 22/43 (51%)
 Frame = +3

Query: 12  VFARMSSDQKQQLIVEYQALGYYVGMCGDGANDCGALRAAHCG 140
           VFA +    K + I   QA G+   M GDG ND  AL  AH G
Sbjct: 6   VFAEVLPSHKVEKIRALQAKGFVTAMVGDGINDSPALAQAHVG 48


>SB_227| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
          Length = 1003

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 19/43 (44%), Positives = 24/43 (55%)
 Frame = +3

Query: 12  VFARMSSDQKQQLIVEYQALGYYVGMCGDGANDCGALRAAHCG 140
           VFAR S  QK  ++   Q +G  V + GDG ND  AL+ A  G
Sbjct: 704 VFARTSPQQKLIIVEGCQRMGAIVAVTGDGVNDSPALKKADIG 746


>SB_52615| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1154

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +3

Query: 9   AVFARMSSDQKQQLIVEYQALGYYVGMCGDGANDCGALRAAHCG 140
           +VF R+S   K  ++   Q  G+ V M GDG ND  AL+ A  G
Sbjct: 659 SVFYRVSPRHKVAIVKALQQHGHVVAMTGDGVNDAVALKRADIG 702


>SB_38048| Best HMM Match : CUB (HMM E-Value=1.4e-31)
          Length = 551

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +3

Query: 75  YYVGMCGDGANDCG 116
           Y VGMCGDGANDCG
Sbjct: 123 YSVGMCGDGANDCG 136


>SB_42324| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 523

 Score = 35.1 bits (77), Expect = 0.013
 Identities = 19/43 (44%), Positives = 23/43 (53%)
 Frame = +3

Query: 12  VFARMSSDQKQQLIVEYQALGYYVGMCGDGANDCGALRAAHCG 140
           VFAR S  QK  ++   Q  G  V + GDG ND  AL+ A  G
Sbjct: 145 VFARTSPQQKLIIVEGCQRNGAIVAVTGDGVNDSPALKKADIG 187


>SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1311

 Score = 35.1 bits (77), Expect = 0.013
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 3   RGAVFARMSSDQKQQLIVEYQALGYYVGMCGDGANDCGALRAAHCG 140
           R  +F+R+    K +++   Q  G    M GDG ND  AL+ A  G
Sbjct: 690 RARLFSRVEPSHKSKIVTYLQEEGEISAMTGDGVNDAPALKKAEIG 735


>SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)
          Length = 1459

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 21   RMSSDQKQQLI--VEYQALGYYVGMCGDGANDCGALRAAHCG 140
            RMS  QK Q++  V+           GDGANDCG ++ AH G
Sbjct: 1190 RMSPLQKAQVVQLVKVSKEKPVTLAIGDGANDCGMIQEAHVG 1231


>SB_21895| Best HMM Match : E1-E2_ATPase (HMM E-Value=0.008)
          Length = 659

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 6   GAVFARMSSDQKQQLIVEYQAL 71
           G VFARMS +QK  L+ E Q +
Sbjct: 637 GTVFARMSPEQKTHLVEELQGI 658


>SB_20525| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
          Length = 1145

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = +3

Query: 81   VGMCGDGANDCGALRAAHCG 140
            VGM GDG ND  AL AA  G
Sbjct: 1006 VGMVGDGVNDGPALAAADLG 1025


>SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 93  GDGANDCGALRAAHCG 140
           GDGAND   ++AAH G
Sbjct: 770 GDGANDVSMIKAAHIG 785


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,035,301
Number of Sequences: 59808
Number of extensions: 45845
Number of successful extensions: 155
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 425519554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)