Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0142
         (322 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   2.8  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   4.8  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          20   6.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      20   6.4  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 111 CGALRAAHC 137
           CGA+R +HC
Sbjct: 71  CGAIRESHC 79


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +1

Query: 16  SRGCRPIRXXXXXLNIRLW 72
           S  C P R     LNIR W
Sbjct: 104 SNPCLPHRNSDRDLNIRKW 122


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = +3

Query: 3   RGAVFARMSSDQKQQLIVEYQAL 71
           R A+F  ++S+QK ++ + ++ L
Sbjct: 93  RNAIFTPLNSEQKYEVRMLFELL 115


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = +3

Query: 3   RGAVFARMSSDQKQQLIVEYQAL 71
           R A+F  ++S+QK ++ + ++ L
Sbjct: 93  RNAIFTPLNSEQKYEVRMLFELL 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,206
Number of Sequences: 438
Number of extensions: 329
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6968808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)