Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0140
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    29   0.63 
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    28   1.1  
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    28   1.1  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    27   3.3  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    26   4.4  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    26   4.4  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    26   4.4  
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    26   4.4  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    26   5.8  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    26   5.8  
SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces pom...    25   7.7  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    25   7.7  
SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces pom...    25   7.7  

>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
 Frame = +3

Query: 510 EHSKNTDARKLSKQTIEQLKEA----ANQNSELNQKIQALLKK 626
           +HSK  +  ++S + ++ L++     A QN+ELN+KIQ   +K
Sbjct: 211 DHSKVCEKLEVSSRQVQDLEKKLAGLAQQNTELNEKIQLFEQK 253


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 516 SKNTDARKLSKQTIEQLKEAANQNSELNQKIQALLKK 626
           S+N D R  +    EQL+   N+N E   K+ ALL +
Sbjct: 47  SENIDLRTTAINLEEQLETVQNENEENKTKLAALLNR 83


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 211 YGVWYRLNTDRNFRLYMFKNHNWVLEAYYGL-GEKI 315
           YG W  + T  +F +Y      W++E  YG+ GE++
Sbjct: 280 YGGWDGVKTFSDFWIYNVDKDLWIMENEYGIPGERV 315


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1372

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = +3

Query: 507  DEHSKNTDARKLSKQTIEQLKEAANQNSEL---NQKIQALLKK 626
            D  S  TD  + SKQTIE L    N    L   N+K Q ++ K
Sbjct: 1314 DSLSNKTDCTESSKQTIETLMNYENDKQTLEGSNKKRQTVVLK 1356


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 522 NTDARKLSKQTIEQLKEAANQNSELNQKIQALLK 623
           NTD R  S    EQL + +  N+ ++ ++  L+K
Sbjct: 720 NTDCRSPSCSDFEQLGQESENNTSISGRVSKLVK 753


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = +1

Query: 10  SVINFCKKCNQGLVSLIRNFHKRS*HFLLCN---LSIMLKKEPKPI 138
           SV+  C +CN       R  H R    ++C    L I L + P+P+
Sbjct: 276 SVVQICPECNNSFTLTRRRRHCRLCGRVICRFCVLEISLPQHPQPL 321


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 170 FREVLIRFLNVIGFGSFFNIIDRLQSKK 87
           FRE    F+N     S  N IDR++ KK
Sbjct: 446 FREKNCAFVNFTSLASAINAIDRIKQKK 473


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 483 DDELLKKFDEH-SKNTDARKLSKQTIEQLKEAANQNSELNQKIQALLKK 626
           ++E +K  DE+ S+   A K   +T+E+L+ A        +++ A LKK
Sbjct: 170 EEENVKTLDEYLSERKSAAKPVGRTVEKLENATKVEKSAPEELFASLKK 218


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 431 PESGSYSNTHLTSPINPGAYSLPSPSHTF 345
           P S S S+  +T P +P A S+    H+F
Sbjct: 581 PSSTSRSSVKITGPSSPNARSMAYEQHSF 609


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 265 KNHNWVLEAYYG 300
           K HNW+L  YYG
Sbjct: 144 KKHNWMLRLYYG 155


>SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 191

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = +1

Query: 250 RLYMFKNHNWVLEA----YYGLGEKIADQKTRQLDL 345
           +L+++ +  W+L+     Y  L EK  D+K  QLDL
Sbjct: 106 KLWLWSSRFWLLDTLLTIYQLLREKTEDEKEHQLDL 141


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 256 YMFKNHNWVLEAYYGLGEKIADQKTRQLDLKVWDGE 363
           Y+ K H   + A   LGE I    +    +K+W+GE
Sbjct: 131 YVLKGHQSSVWAVLALGEDIFITGSADKLIKIWNGE 166


>SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 480 PDDELLKKFDEHSKNTDARKLSKQTIEQLKEAANQNSE 593
           PDD+LL + D HS  +   +L +Q++  + EA +   E
Sbjct: 282 PDDKLLAESDHHSA-SQIDELVRQSLNVMSEAKSWTFE 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,749,517
Number of Sequences: 5004
Number of extensions: 56012
Number of successful extensions: 177
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)