Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0140
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0765 - 20421813-20423174,20423591-20423771,20423862-204241...    31   0.85 
01_06_0597 - 30505800-30506021,30506135-30506566,30506673-30506819     30   1.5  
03_06_0592 - 34941530-34941550,34942444-34942806,34942940-349429...    30   2.0  
11_05_0010 - 18356835-18357080,18357475-18357672,18357780-183580...    29   3.4  
11_05_0007 - 18324969-18325063,18326580-18326745,18327078-183272...    29   4.5  
01_06_0599 - 30513858-30514079,30514157-30514588,30514683-30514823     28   6.0  
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298...    28   7.9  

>10_08_0765 -
           20421813-20423174,20423591-20423771,20423862-20424117,
           20424768-20425095,20425218-20426156,20427015-20427761,
           20428517-20428789
          Length = 1361

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 462 LFTLVKPDDELLKKFDEHSKNTDA 533
           LFT+ KP DE +  FD H +  DA
Sbjct: 514 LFTIFKPSDEPIDSFDSHDQTDDA 537


>01_06_0597 - 30505800-30506021,30506135-30506566,30506673-30506819
          Length = 266

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/36 (50%), Positives = 23/36 (63%)
 Frame = -1

Query: 422 GSYSNTHLTSPINPGAYSLPSPSHTFRSS*RVF*SA 315
           GSY N  LTSPI PGA +  + + TF SS  +F +A
Sbjct: 107 GSY-NALLTSPILPGAGAYDAAAETFESSHDLFRAA 141


>03_06_0592 -
           34941530-34941550,34942444-34942806,34942940-34942991,
           34943277-34943488
          Length = 215

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -1

Query: 113 IIDRLQSKKC*ERLWKFLIKETKPWLHFLQKL 18
           +I RLQ+K      W FL++ETK  + F+Q++
Sbjct: 151 VIARLQAKGEERSRWTFLLRETKAMMTFIQEV 182


>11_05_0010 -
           18356835-18357080,18357475-18357672,18357780-18358046,
           18358870-18359067,18359151-18359417,18359524-18359724,
           18359807-18361363,18361499-18361859,18362602-18363467
          Length = 1386

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 421 PLSGWSHLAPLVTLCSRWSNLMMNFSKSLMNIQRILMQEN 540
           PLSGW+  +P  ++  RW N  +     L  I +IL Q++
Sbjct: 731 PLSGWAEFSPF-SILPRWINSSLTNLSYLSIIVKILQQKD 769


>11_05_0007 -
           18324969-18325063,18326580-18326745,18327078-18327275,
           18327377-18327643,18328070-18328129,18328767-18329033,
           18329156-18329359,18329441-18331496,18332517-18333358
          Length = 1384

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +1

Query: 421 PLSGWSHLAPLVTLCSRWSNLMMNFSKSLMNIQRILMQEN 540
           PLS W   +PL TL  +W N  +     L  I +IL QE+
Sbjct: 768 PLSVWEEFSPLSTL-PKWINSSLTNLSYLSIIVKILRQED 806


>01_06_0599 - 30513858-30514079,30514157-30514588,30514683-30514823
          Length = 264

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = -1

Query: 422 GSYSNTHLTSPINPGAYSLPSPSHTFRSS*RVF*SA 315
           GSY N  L SPI PGA +  + + TF SS  +F +A
Sbjct: 105 GSY-NALLASPILPGAGAYDAAAETFESSHDLFRAA 139


>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
            31029955-31030017,31031597-31031704,31031772-31031836,
            31031928-31032015,31032104-31032157,31032234-31032380,
            31033358-31033429,31034077-31034226,31034317-31034430,
            31034762-31034875,31035925-31036077,31037437-31037529,
            31038202-31038318,31038984-31039086,31039192-31039376,
            31039448-31039522,31040451-31040534,31041547-31041588,
            31041668-31041847,31042109-31042162,31042239-31042280,
            31042869-31042967,31043040-31043174,31043325-31043427,
            31045061-31045134,31045227-31045270,31045393-31045471,
            31045592-31045705,31045842-31045946,31046027-31046161,
            31046447-31046546,31046870-31046883,31046936-31047004,
            31047079-31047182,31047299-31047347,31047931-31048023,
            31048102-31048210,31048619-31048755,31048851-31048928,
            31049015-31049104,31049402-31049467,31049546-31049638,
            31049711-31049839,31050024-31050122,31051366-31051512,
            31051605-31051910
          Length = 2050

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +3

Query: 477  KPDDELLKKFDEHSKNTDARKLSKQTIEQLKEAANQNSELNQKIQALLK 623
            K +DEL +  +E  K  +  + +K  + Q KE AN N    +++++ L+
Sbjct: 963  KENDELFQLKEELEKYKEEAQANKSYMLQYKEIANSNESALKQMESALQ 1011


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,430,821
Number of Sequences: 37544
Number of extensions: 313788
Number of successful extensions: 729
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)