Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0140
         (683 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)                  31   1.1  
SB_24813| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)                      29   4.6  
SB_43597| Best HMM Match : TP2 (HMM E-Value=1.7)                       29   4.6  
SB_15792| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_12150| Best HMM Match : DUF590 (HMM E-Value=0)                      29   4.6  
SB_57684| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_50198| Best HMM Match : Frizzled (HMM E-Value=0)                    28   8.1  
SB_51536| Best HMM Match : Trypsin (HMM E-Value=0)                     28   8.1  
SB_20508| Best HMM Match : Filament (HMM E-Value=0.037)                28   8.1  

>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
          Length = 1080

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 452  NGAKCDHPESGSYSNTHLTSPINPGAYSLPSPS 354
            NG + D  +    S +H +SP  PG+ S+P+PS
Sbjct: 953  NGDRGDDGDGDGSSPSHRSSPSTPGSPSIPTPS 985


>SB_24813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1218

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +3

Query: 543 SKQTIEQLKEAANQNSELNQKIQALLKK 626
           ++Q + QLK   + N+EL Q+++ L+KK
Sbjct: 839 NRQLVTQLKAKTSHNTELQQEVEVLIKK 866


>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
          Length = 487

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 479 FDQREQSVTNGAKCDHPESGSYSNTHLTSPINPG 378
           +D    SVTN  +   P S +Y++T +T+P+  G
Sbjct: 235 YDIAPSSVTNQMRGHEPRSITYNHTSITAPLTTG 268


>SB_43597| Best HMM Match : TP2 (HMM E-Value=1.7)
          Length = 272

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 321 SKNSSTRPKSVGRRGQTVSSGIYRTG 398
           S+ SS RP S  RR  + S G+ RTG
Sbjct: 225 SRPSSARPSSASRRASSRSRGLARTG 250


>SB_15792| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
 Frame = -2

Query: 439 VTTQKVALIAILISPVL*IPELTVCPRRPT-------LLGRVDEFFDQQSF 308
           V    V ++ +L+  VL   E TVCP+RP        + GR+ +F +Q+++
Sbjct: 3   VEKSAVNVVVVLVLTVLSYSEATVCPQRPAGVADPTDVNGRIKKFENQKAY 53


>SB_12150| Best HMM Match : DUF590 (HMM E-Value=0)
          Length = 393

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = -1

Query: 644 QNVYHSFFQQCLYLLVQF*ILVGSFFKLFYCLFGEFSCISIL*MFIKLFEKFIIRFDQRE 465
           Q  Y   F   +YL  QF   V  +  LFY  FG+ +C SI+ +   LF+  +I  D  +
Sbjct: 6   QTQYEDNFSFKMYLF-QF---VNYYSSLFYIAFGKLNCFSII-VLSCLFDLVVINDDNDD 60

Query: 464 QS 459
            +
Sbjct: 61  DN 62


>SB_57684| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 571

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = -1

Query: 230 SLYQTP*LTAKATASTTNTVFREVLIRFLN 141
           SL Q   LT+ AT  T   + REVLIRF+N
Sbjct: 361 SLCQEKALTSAAT-KTREAIVREVLIRFIN 389


>SB_50198| Best HMM Match : Frizzled (HMM E-Value=0)
          Length = 654

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 243 SVGVQPIPNAVTHSKGDSLN 184
           SVG  P PN++T+SK   LN
Sbjct: 630 SVGSSPAPNSLTYSKNSGLN 649


>SB_51536| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 347

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 290 RTTDLVKRLLIKKLVNST*KCGTARANCKLRDL*DW*DEYCYKS 421
           R  DL  RL      +    C + +A CK +D  DW  + C K+
Sbjct: 3   RLQDLSSRLFSGACADENSYCSSYKAYCKDKDYVDWLKQNCKKT 46


>SB_20508| Best HMM Match : Filament (HMM E-Value=0.037)
          Length = 722

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +3

Query: 513 HSKNTDARKLSKQTIEQLKEAANQNSELNQKIQALLKK 626
           HSK  +   LSK   E+ K+ ANQ ++L  +IQA  K+
Sbjct: 3   HSKEVET--LSKSHDEKTKDLANQINDLKTEIQASEKR 38


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,513,698
Number of Sequences: 59808
Number of extensions: 381172
Number of successful extensions: 1119
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)