Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0140
(683 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41528-6|AAK39169.3| 424|Caenorhabditis elegans Hypothetical pr... 34 0.11
Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr... 31 1.0
U97550-3|AAK18981.2| 423|Caenorhabditis elegans Hypothetical pr... 31 1.0
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos... 31 1.0
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele... 31 1.0
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 30 1.3
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 30 1.3
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z81083-4|CAB03102.1| 645|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr... 29 4.1
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp... 29 4.1
U50184-1|ABJ99064.1| 1540|Caenorhabditis elegans Hypothetical pr... 28 5.4
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p... 27 9.4
>U41528-6|AAK39169.3| 424|Caenorhabditis elegans Hypothetical
protein C15C7.6 protein.
Length = 424
Score = 33.9 bits (74), Expect = 0.11
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
Frame = +3
Query: 348 SVGRRGQTVSSGIYRTGEMSIAIRATFWVVTFGTIGYALFTLVKPDDELLKKFDEHSKNT 527
+V QT+ G Y T +M I+ + ++ G+ YA F VK + L FD + NT
Sbjct: 278 AVAEAYQTMIHGHYSTHQMGISQHVSL-LLPIGS--YAKFNNVKVFGKSLNAFDHFAVNT 334
Query: 528 DARKL--SKQTIEQLKEAANQNSELNQKIQALLKK*MINILS*NV 656
+A L S + +++L EA N+E + +ALLK L N+
Sbjct: 335 EADHLPVSHEDLDKL-EANYGNTEEVLRHRALLKSEFSQFLDRNL 378
>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical protein
R107.8 protein.
Length = 1429
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1
Query: 425 SGSYSNTHLTSPINPGAYSLPSPSH 351
S S +THLT P + G+ S PSP H
Sbjct: 1337 SNSRDSTHLTPPPSDGSTSTPSPQH 1361
>U97550-3|AAK18981.2| 423|Caenorhabditis elegans Hypothetical
protein T20F7.6 protein.
Length = 423
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -1
Query: 470 REQSVTNGAKCDHPESGSYSNTHLTSPINPGAYSLPSPSH 351
RE +TN A +H S S S ++ P N +YS P P+H
Sbjct: 383 REILLTNAANFEHESSNSSSPSNSALPSNQNSYSKP-PTH 421
>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
protein 1 protein.
Length = 1963
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 486 DELLKKFDEHSKNTDARKLSKQTIEQLKEAANQNSELNQKI 608
D L ++ ++ KN D R+ +T+ L+E Q + QK+
Sbjct: 928 DRLSEEEQQNEKNNDERRKQMETVRDLEEQLEQEEQARQKL 968
>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.elegans
homeotic lin-12 protein gene, complete cds. ).
Length = 1429
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1
Query: 425 SGSYSNTHLTSPINPGAYSLPSPSH 351
S S +THLT P + G+ S PSP H
Sbjct: 1337 SNSRDSTHLTPPPSDGSTSTPSPQH 1361
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 471 LVKPDDELLKKFDEHSKNTDARKLSKQTIEQLKEAANQNSELNQKIQAL 617
L+K D+L K EH + A KLS +Q +E+A E KI A+
Sbjct: 1453 LIKGWDDLFNKLKEHQNSLSAMKLSPY-YKQFEESAQSWDEKLNKINAM 1500
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 471 LVKPDDELLKKFDEHSKNTDARKLSKQTIEQLKEAANQNSELNQKIQAL 617
L+K D+L K EH + A KLS +Q +E+A E KI A+
Sbjct: 1453 LIKGWDDLFNKLKEHQNSLSAMKLSPY-YKQFEESAQSWDEKLNKINAM 1500
>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +3
Query: 477 KPDDELLKKFDEHSKNTDARKLSKQTIEQLKEAANQNSELNQKIQALLK 623
K DEL+++FD SK + R+ + + L E ++++L Q I+ L+
Sbjct: 1745 KRQDELVREFDALSKLAEDRRNALEDAVCLYEYMRESADLGQSIEENLR 1793
>Z81083-4|CAB03102.1| 645|Caenorhabditis elegans Hypothetical
protein F44F1.5 protein.
Length = 645
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +3
Query: 447 TIGYALFTLVKPDDELLKKFDEHSKNTDARKL-SKQTIEQLKEAANQNSELNQKIQALLK 623
+IG ++ V +D+L+ K+ HSK D R + + + E NS N+ Q K
Sbjct: 248 SIGCSMCNSVTSEDDLIPKYSVHSKVLDTRVIHCFNCLSEKNEQYTYNSATNEFEQVYCK 307
Query: 624 K 626
+
Sbjct: 308 E 308
>Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +3
Query: 477 KPDDELLKKFDEHSKNTDARKLSKQTIEQLKEAANQNSELNQKIQALLK 623
K DEL+++FD SK + R+ + + L E ++++L Q I+ L+
Sbjct: 1745 KRQDELVREFDALSKLAEDRRNALEDAVCLYEYMRESADLGQSIEENLR 1793
>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
spectrin homolog Sma1 protein.
Length = 4063
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +3
Query: 477 KPDDELLKKFDEHSKNTDARKLSKQTIEQLKEAANQNSELNQKIQALLK 623
K DEL+++FD SK + R+ + + L E ++++L Q I+ L+
Sbjct: 1745 KRQDELVREFDALSKLAEDRRNALEDAVCLYEYMRESADLGQSIEENLR 1793
>U50184-1|ABJ99064.1| 1540|Caenorhabditis elegans Hypothetical protein
W03A3.2 protein.
Length = 1540
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 575 CQPKFRIEPKDTSIVEKMNDKHSVLERL 658
C+PK R P + I+E+MN +H ++ ++
Sbjct: 1227 CKPKLRHLPTNKLILEQMNTQHPIVGKI 1254
>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
protein C52B9.8 protein.
Length = 1336
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +3
Query: 483 DDELLKKFDEHSKNTDARKLSKQTIEQLKEAANQNSE--LNQKIQALLKK 626
DD LKK +H K ++ K+ ++ ++ + +SE L +KI+A ++K
Sbjct: 1044 DDNSLKKEKKHRKEDHPKEKEKEKKKEKEQEKSTDSEKDLKRKIEAPIEK 1093
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,098,197
Number of Sequences: 27780
Number of extensions: 308187
Number of successful extensions: 947
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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