Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0140
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein ...    30   1.2  
At5g46070.1 68418.m05665 guanylate-binding family protein contai...    30   1.6  
At2g38910.1 68415.m04783 calcium-dependent protein kinase, putat...    29   3.8  
At5g16830.1 68418.m01972 syntaxin 21 (SYP21) / PEP12 homolog ide...    28   5.0  
At5g40220.1 68418.m04880 MADS-box family protein contains Pfam p...    28   6.6  
At3g52530.1 68416.m05778 protein kinase family protein contains ...    28   6.6  
At2g37150.2 68415.m04558 zinc finger (C3HC4-type RING finger) fa...    28   6.6  
At2g37150.1 68415.m04557 zinc finger (C3HC4-type RING finger) fa...    28   6.6  
At1g65320.1 68414.m07407 CBS domain-containing protein contains ...    28   6.6  
At5g56880.1 68418.m07098 expressed protein                             27   8.8  

>At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein /
           transcription factor jumonji (jmj) family protein
           contains Pfam domians PF02375: jmjN domain, PF02373:
           jmjC domain and PF00096: Zinc finger, C2H2 type
          Length = 1327

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +3

Query: 435 VTFGTIGYALFTLVKPDDELLKKFDEHSKNTDARKLSKQTIEQ 563
           V  G +G+   ++V+P ++ LK   E    TDA+++   + E+
Sbjct: 579 VACGVLGFPFMSVVQPSEKALKDLSERQGETDAQEIMTLSSEK 621


>At5g46070.1 68418.m05665 guanylate-binding family protein contains
           Pfam domains PF02263: Guanylate-binding protein,
           N-terminal domain and PF02841: Guanylate-binding
           protein, C-terminal domain
          Length = 1060

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 489 ELLKKFDEHSKNTDARKLSKQTIEQLKEAANQNSELNQKIQALLK 623
           E  K++DE   N D +KL     E++ +   +NS LN++   L+K
Sbjct: 520 EYQKRYDE--SNNDKKKLEDIYRERITKLQGENSSLNERCSTLVK 562


>At2g38910.1 68415.m04783 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium-dependent protein
           kinase, isoform AK1 (CDPK) [Arabidopsis thaliana]
           SWISS-PROT:Q06850; contains protein kinase domain,
           Pfam:PF00069; contains EF hand domain (calcium-binding
           EF-hand), Pfam:PF00036, INTERPRO:IPR002048
          Length = 583

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 443 KCDHPESGSYSNTHLTSPINPGAYSLPSPS 354
           K D   +G  SN H++S ++P   +LP+PS
Sbjct: 44  KNDKSVNGDDSNGHVSSTVDPAPSTLPTPS 73


>At5g16830.1 68418.m01972 syntaxin 21 (SYP21) / PEP12 homolog
           identical to Syntaxin homolog (PEP12 homolog)
           (SP:Q39233) and syntaxin of plants 21 (GP:899122)
           {Arabidopsis thaliana}; contains Pfam profiles
           PF05739:SNARE domain and PF00804:  Syntaxin
          Length = 279

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
 Frame = +3

Query: 339 RPKSVGRRGQTVSSGIYRTGEMSIAIRATFWVVTFGTIGYALFTLVKPDDELLK---KFD 509
           RP S G   Q V++GI+R   +S A+ + F +V   +IG    TL +  D+L K   +  
Sbjct: 25  RPSSRGDPSQEVAAGIFR---ISTAVNSFFRLV--NSIGTPKDTL-ELRDKLQKTRLQIS 78

Query: 510 EHSKNTDARKLSKQTIEQLKEAANQ-----NSELNQKIQALLKK 626
           E  KNT A KL + +   L  +A+Q     +++L +  Q++LK+
Sbjct: 79  ELVKNTSA-KLKEASEADLHGSASQIKKIADAKLAKDFQSVLKE 121


>At5g40220.1 68418.m04880 MADS-box family protein contains Pfam
           profile PF00319: SRF-type transcription factor
           (DNA-binding and dimerisation domain); MADS-box protein
           AGL43
          Length = 324

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -1

Query: 494 KFIIRFDQREQSVTNGAKCDHPESGSYSNTHLTSPINPGAYSLPSPSH 351
           KF  R +  E    N  + DH    S S  H T  +NP  +SL   +H
Sbjct: 142 KFHERLEFLESRKQNETQPDHHSLASSSLNHQTQSLNPSQFSLFMYNH 189


>At3g52530.1 68416.m05778 protein kinase family protein contains
           protein kinase domain, INTERPRO:IPR000719
          Length = 351

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 298 GLGEKIADQKTRQLDLKVWDGEGK 369
           G GE++ADQ    +D  +W+GE +
Sbjct: 267 GCGEELADQFMYVIDSNIWNGESE 290


>At2g37150.2 68415.m04558 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 546

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = -1

Query: 494 KFIIRFDQREQSVTNGAKCDHPESGSYSNTHLTSPINPGAYSLPSPSHTFRSS*R 330
           +F  R     +S ++G++  H  S S   +HL +   P  +  P P  ++RS  R
Sbjct: 335 RFSHRSTSTYRSSSHGSRSGHVASSSGDRSHLVTETYPSRHLRPPPHISWRSGDR 389


>At2g37150.1 68415.m04557 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 546

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = -1

Query: 494 KFIIRFDQREQSVTNGAKCDHPESGSYSNTHLTSPINPGAYSLPSPSHTFRSS*R 330
           +F  R     +S ++G++  H  S S   +HL +   P  +  P P  ++RS  R
Sbjct: 335 RFSHRSTSTYRSSSHGSRSGHVASSSGDRSHLVTETYPSRHLRPPPHISWRSGDR 389


>At1g65320.1 68414.m07407 CBS domain-containing protein contains
           Pfam profile PF00571: CBS domain
          Length = 425

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 471 LVKPDDELLKKFDEHSKNTDARKLSKQTIEQL 566
           +V PD+ LLK+ D  ++  DA ++ KQ + +L
Sbjct: 101 VVSPDNTLLKQVDPGTRLIDALEMMKQGVRRL 132


>At5g56880.1 68418.m07098 expressed protein 
          Length = 159

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +3

Query: 486 DELLKKFDEHSKNTDARKLSKQT 554
           +E+  K DE+ KNT A++++K+T
Sbjct: 2   EEMRNKVDENGKNTTAKEVTKKT 24


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,013,337
Number of Sequences: 28952
Number of extensions: 279686
Number of successful extensions: 851
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)