Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0139
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0347 - 2730242-2730425,2730541-2730692,2730782-2730940,273...    29   2.9  
01_01_0885 + 6966700-6966979,6967930-6968110,6968224-6968365,696...    29   2.9  
06_03_0181 + 17618888-17619125,17621503-17621683,17621765-176219...    29   3.9  
04_04_1534 + 34200538-34200589,34200677-34200857,34201701-342018...    28   5.1  
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628...    28   5.1  
02_05_0341 - 28115835-28116404                                         27   8.9  

>03_01_0347 -
           2730242-2730425,2730541-2730692,2730782-2730940,
           2734144-2734618,2734713-2734775,2734870-2735078
          Length = 413

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 533 FGVLLWCLTYVGACFNGITLIILGW 607
           FG+  WC+ Y G   NG T+    W
Sbjct: 292 FGLKFWCIVYSGFACNGFTVFAQLW 316


>01_01_0885 +
           6966700-6966979,6967930-6968110,6968224-6968365,
           6968448-6968517,6968617-6968783
          Length = 279

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +2

Query: 488 LRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIAL 616
           LR++ L  D+   L     LW L+ +G+C N +TL+ + ++ L
Sbjct: 187 LRQIALGRDIKKFLIVIAGLWLLSVLGSCCNFLTLVYIVFVVL 229


>06_03_0181 +
           17618888-17619125,17621503-17621683,17621765-17621906,
           17622002-17622071,17622162-17622307,17623382-17623948,
           17624558-17624641,17624723-17624797,17625049-17625217,
           17625395-17625586,17625662-17626053
          Length = 751

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +2

Query: 491 RRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIAL 616
           R + L  DL   L   V LW L+ VG+C + +TLI +  + L
Sbjct: 174 REIALGHDLKKFLGVIVALWVLSEVGSCCDFLTLIYVAVLML 215


>04_04_1534 +
           34200538-34200589,34200677-34200857,34201701-34201842,
           34201963-34202032,34202169-34202302
          Length = 192

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 527 LKFGVLLWCLTYVGACFNGITLIIL 601
           +K  ++LW ++Y+G  FN +TLI +
Sbjct: 124 IKVILILWVVSYIGMLFNFLTLIYI 148


>04_01_0480 +
           6279576-6279755,6279863-6279988,6280074-6280151,
           6280847-6280972,6281244-6281345,6281416-6281490,
           6281852-6281975,6283005-6283107,6283546-6283617,
           6283662-6283788,6284125-6284180,6284438-6284453
          Length = 394

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +1

Query: 505 GGGPGGLAEVRRAAVVPHVRGGVLQRDHAHHPRLDS 612
           GG  GG A+  R  +  HV G V Q    HHP+L S
Sbjct: 292 GGSAGGGADGSRYWLAIHVVGVVRQTFTNHHPKLCS 327


>02_05_0341 - 28115835-28116404
          Length = 189

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 10  RCPHRRHSVM*HCVLTVIETHNSSLNCNLIVYLFENKHGIR*RRC 144
           +C HR H+    C+ T +  H+S  +C  ++   E   G R  RC
Sbjct: 118 QCDHRFHAA---CIDTWLRAHSSCPSCRRVLVAAEMPPGERCGRC 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,190,175
Number of Sequences: 37544
Number of extensions: 175367
Number of successful extensions: 671
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)