Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0139
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   0.44 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   1.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   1.0  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -1

Query: 604 TEDDERDPVEARPHVREAPQQHAELQRVHQVLHQEQSAQ 488
           T+     P + + H  +A QQH +    H +  Q+Q +Q
Sbjct: 174 TQHPHMQPQQGQ-HQSQAQQQHLQAHEQHMMYQQQQQSQ 211


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +2

Query: 344 KNVLQAVQKTNDGHPFKWL 400
           + +L+A +++N   PF+WL
Sbjct: 210 RGILEAARRSNLSQPFQWL 228


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +2

Query: 344 KNVLQAVQKTNDGHPFKWL 400
           + +L+A +++N   PF+WL
Sbjct: 300 RGILEAARRSNLSQPFQWL 318


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,775
Number of Sequences: 438
Number of extensions: 1593
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)