Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0139
         (616 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19460.1 68416.m02467 reticulon family protein (RTNLB11) weak...    31   0.61 
At2g46170.1 68415.m05741 reticulon family protein (RTNLB5) weak ...    29   1.9  
At3g61560.1 68416.m06895 reticulon family protein (RTNLB6) conta...    28   5.7  
At4g23630.1 68417.m03403 reticulon family protein (RTNLB1) weak ...    27   7.5  
At2g15280.1 68415.m01742 reticulon family protein (RTNLB10) low ...    27   7.5  

>At3g19460.1 68416.m02467 reticulon family protein (RTNLB11) weak
           similarity to neuroendocrine-specific protein C [Homo
           sapiens] GI:307311; identical to cDNA RTNLB11
           GI:32331878
          Length = 200

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 527 LKFGVLLWCLTYVGACFNGITLIILG 604
           L+  ++LW ++YVG   N +TL+ +G
Sbjct: 128 LQVSLVLWAISYVGTLINSLTLVYIG 153


>At2g46170.1 68415.m05741 reticulon family protein (RTNLB5) weak
           similarity to Nogo-C protein [Rattus norvegicus]
           GI:6822251; contains Pfam profile PF02453: Reticulon
          Length = 255

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +2

Query: 488 LRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIAL 616
           LR + L  DL   L   V LW ++ VG  FN +TL+ + ++ L
Sbjct: 161 LRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVIL 203


>At3g61560.1 68416.m06895 reticulon family protein (RTNLB6) contains
           Pfam profile PF02453: Reticulon
          Length = 253

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 488 LRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIAL 616
           LR + L  DL   L     LW ++ VG  FN +TL+ + ++ L
Sbjct: 161 LRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVL 203


>At4g23630.1 68417.m03403 reticulon family protein (RTNLB1) weak
           similarity to Nogo-C protein [Rattus norvegicus]
           GI:6822251; contains Pfam profile PF02453: Reticulon
          Length = 275

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 545 LWCLTYVGACFNGITLIILGWIAL 616
           LW L+ +G CFN +TL  +  + L
Sbjct: 201 LWVLSILGGCFNFLTLAYIALVLL 224


>At2g15280.1 68415.m01742 reticulon family protein (RTNLB10) low
           similarity to neuroendocrine-specific protein C [Homo
           sapiens] GI:307311, SP|Q64548 Reticulon 1
           (Neuroendocrine-specific protein) {Rattus norvegicus};
           contains Pfam profile PF02453: Reticulon
          Length = 201

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +2

Query: 491 RRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILG 604
           R +++  +     +  V+LW +++VG   N +T++ LG
Sbjct: 108 REIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLG 145


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,288,400
Number of Sequences: 28952
Number of extensions: 128070
Number of successful extensions: 441
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)